Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav16d-dv11A0A075B617 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC16.53■□□□□ 0.24
Trav16d-dv11A0A075B617 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav16d-dv11A0A075B617 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav16d-dv11A0A075B617 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav16d-dv11A0A075B617 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav16d-dv11A0A075B617 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav16d-dv11A0A075B617 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav16d-dv11A0A075B617 Gm16148-201ENSMUST00000119653 893 ntBASIC16.52■□□□□ 0.24
Trav16d-dv11A0A075B617 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav16d-dv11A0A075B617 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC16.51■□□□□ 0.23
Trav16d-dv11A0A075B617 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav16d-dv11A0A075B617 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Trav16d-dv11A0A075B617 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav16d-dv11A0A075B617 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav16d-dv11A0A075B617 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav16d-dv11A0A075B617 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav16d-dv11A0A075B617 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav16d-dv11A0A075B617 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Trav16d-dv11A0A075B617 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav16d-dv11A0A075B617 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trav16d-dv11A0A075B617 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav16d-dv11A0A075B617 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trav16d-dv11A0A075B617 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav16d-dv11A0A075B617 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav16d-dv11A0A075B617 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav16d-dv11A0A075B617 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav16d-dv11A0A075B617 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav16d-dv11A0A075B617 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav16d-dv11A0A075B617 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC16.47■□□□□ 0.23
Trav16d-dv11A0A075B617 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav16d-dv11A0A075B617 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav16d-dv11A0A075B617 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav16d-dv11A0A075B617 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trav16d-dv11A0A075B617 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trav16d-dv11A0A075B617 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trav16d-dv11A0A075B617 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Trav16d-dv11A0A075B617 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav16d-dv11A0A075B617 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trav16d-dv11A0A075B617 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav16d-dv11A0A075B617 Gm13042-201ENSMUST00000119244 1955 ntBASIC16.45■□□□□ 0.22
Trav16d-dv11A0A075B617 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Trav16d-dv11A0A075B617 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav16d-dv11A0A075B617 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
Trav16d-dv11A0A075B617 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav16d-dv11A0A075B617 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trav16d-dv11A0A075B617 Gm8109-201ENSMUST00000194076 746 ntBASIC16.44■□□□□ 0.22
Trav16d-dv11A0A075B617 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav16d-dv11A0A075B617 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav16d-dv11A0A075B617 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav16d-dv11A0A075B617 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav16d-dv11A0A075B617 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav16d-dv11A0A075B617 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav16d-dv11A0A075B617 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav16d-dv11A0A075B617 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav16d-dv11A0A075B617 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav16d-dv11A0A075B617 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav16d-dv11A0A075B617 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Trav16d-dv11A0A075B617 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav16d-dv11A0A075B617 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC16.41■□□□□ 0.22
Trav16d-dv11A0A075B617 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 177.7 ms