Protein–RNA interactions for Protein: Q99MB1

Tlr3, Toll-like receptor 3, mousemouse

Predictions only

Length 905 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tlr3Q99MB1 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC24.41■■□□□ 1.5
Tlr3Q99MB1 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Tlr3Q99MB1 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
Tlr3Q99MB1 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Tlr3Q99MB1 Mir3960-201ENSMUST00000198213 73 ntBASIC24.39■■□□□ 1.49
Tlr3Q99MB1 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Tlr3Q99MB1 Gm6311-201ENSMUST00000073790 878 ntBASIC24.39■■□□□ 1.49
Tlr3Q99MB1 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
Tlr3Q99MB1 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
Tlr3Q99MB1 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Tlr3Q99MB1 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Tlr3Q99MB1 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Tlr3Q99MB1 AC154454.1-201ENSMUST00000225253 216 ntBASIC24.36■■□□□ 1.49
Tlr3Q99MB1 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Tlr3Q99MB1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Tlr3Q99MB1 AC167019.3-201ENSMUST00000228225 1266 ntBASIC24.35■■□□□ 1.49
Tlr3Q99MB1 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Tlr3Q99MB1 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Tlr3Q99MB1 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Tlr3Q99MB1 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
Tlr3Q99MB1 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Tlr3Q99MB1 Cap2-205ENSMUST00000225824 1634 ntBASIC24.32■■□□□ 1.48
Tlr3Q99MB1 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Tlr3Q99MB1 Gm9812-201ENSMUST00000061934 968 ntBASIC24.32■■□□□ 1.48
Tlr3Q99MB1 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Tlr3Q99MB1 Gm12818-201ENSMUST00000117562 1349 ntBASIC24.32■■□□□ 1.48
Tlr3Q99MB1 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Tlr3Q99MB1 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
Tlr3Q99MB1 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Tlr3Q99MB1 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC24.3■■□□□ 1.48
Tlr3Q99MB1 Gm45364-201ENSMUST00000210883 159 ntBASIC24.3■■□□□ 1.48
Tlr3Q99MB1 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Tlr3Q99MB1 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
Tlr3Q99MB1 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Tlr3Q99MB1 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Tlr3Q99MB1 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
Tlr3Q99MB1 Gm42699-201ENSMUST00000198104 1657 ntBASIC24.29■■□□□ 1.48
Tlr3Q99MB1 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Tlr3Q99MB1 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
Tlr3Q99MB1 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Tlr3Q99MB1 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Tlr3Q99MB1 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Tlr3Q99MB1 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Tlr3Q99MB1 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
Tlr3Q99MB1 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Tlr3Q99MB1 AC122317.2-201ENSMUST00000218708 1248 ntBASIC24.27■■□□□ 1.48
Tlr3Q99MB1 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
Tlr3Q99MB1 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Tlr3Q99MB1 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Tlr3Q99MB1 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Tlr3Q99MB1 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Tlr3Q99MB1 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Tlr3Q99MB1 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC24.25■■□□□ 1.47
Tlr3Q99MB1 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Tlr3Q99MB1 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
Tlr3Q99MB1 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Tlr3Q99MB1 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
Tlr3Q99MB1 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Tlr3Q99MB1 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Tlr3Q99MB1 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC24.23■■□□□ 1.47
Tlr3Q99MB1 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Tlr3Q99MB1 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
Tlr3Q99MB1 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Tlr3Q99MB1 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Tlr3Q99MB1 AC153911.1-201ENSMUST00000220378 758 ntBASIC24.22■■□□□ 1.47
Tlr3Q99MB1 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC24.22■■□□□ 1.47
Tlr3Q99MB1 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Tlr3Q99MB1 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Tlr3Q99MB1 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Tlr3Q99MB1 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Tlr3Q99MB1 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Tlr3Q99MB1 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Tlr3Q99MB1 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC24.2■■□□□ 1.46
Tlr3Q99MB1 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
Tlr3Q99MB1 Pkd1-207ENSMUST00000228550 1050 ntBASIC24.2■■□□□ 1.46
Tlr3Q99MB1 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Tlr3Q99MB1 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Tlr3Q99MB1 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Tlr3Q99MB1 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC24.19■■□□□ 1.46
Tlr3Q99MB1 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC24.19■■□□□ 1.46
Tlr3Q99MB1 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC24.19■■□□□ 1.46
Tlr3Q99MB1 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Tlr3Q99MB1 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Tlr3Q99MB1 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Tlr3Q99MB1 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.18■■□□□ 1.46
Tlr3Q99MB1 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC24.18■■□□□ 1.46
Tlr3Q99MB1 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC24.17■■□□□ 1.46
Tlr3Q99MB1 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Tlr3Q99MB1 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC24.17■■□□□ 1.46
Tlr3Q99MB1 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Tlr3Q99MB1 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC24.17■■□□□ 1.46
Tlr3Q99MB1 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Tlr3Q99MB1 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Tlr3Q99MB1 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC24.15■■□□□ 1.46
Tlr3Q99MB1 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC24.15■■□□□ 1.46
Tlr3Q99MB1 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Tlr3Q99MB1 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Tlr3Q99MB1 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
Tlr3Q99MB1 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Tlr3Q99MB1 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 76.1 ms