Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
Clrn3Q8BHH8 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.17■□□□□ 0.98
Clrn3Q8BHH8 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clrn3Q8BHH8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clrn3Q8BHH8 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clrn3Q8BHH8 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Clrn3Q8BHH8 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clrn3Q8BHH8 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Clrn3Q8BHH8 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clrn3Q8BHH8 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clrn3Q8BHH8 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clrn3Q8BHH8 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clrn3Q8BHH8 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Clrn3Q8BHH8 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Clrn3Q8BHH8 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC21.14■□□□□ 0.97
Clrn3Q8BHH8 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Clrn3Q8BHH8 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.14■□□□□ 0.97
Clrn3Q8BHH8 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Clrn3Q8BHH8 Gm4799-201ENSMUST00000095396 657 ntBASIC21.13■□□□□ 0.97
Clrn3Q8BHH8 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Clrn3Q8BHH8 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clrn3Q8BHH8 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clrn3Q8BHH8 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clrn3Q8BHH8 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Clrn3Q8BHH8 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clrn3Q8BHH8 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clrn3Q8BHH8 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Clrn3Q8BHH8 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clrn3Q8BHH8 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clrn3Q8BHH8 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Clrn3Q8BHH8 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21.11■□□□□ 0.97
Clrn3Q8BHH8 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.11■□□□□ 0.97
Clrn3Q8BHH8 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Clrn3Q8BHH8 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.1■□□□□ 0.97
Clrn3Q8BHH8 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Clrn3Q8BHH8 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clrn3Q8BHH8 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clrn3Q8BHH8 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Clrn3Q8BHH8 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clrn3Q8BHH8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clrn3Q8BHH8 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Clrn3Q8BHH8 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC21.09■□□□□ 0.97
Clrn3Q8BHH8 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.09■□□□□ 0.97
Clrn3Q8BHH8 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Clrn3Q8BHH8 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Clrn3Q8BHH8 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Clrn3Q8BHH8 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Clrn3Q8BHH8 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.08■□□□□ 0.96
Clrn3Q8BHH8 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Clrn3Q8BHH8 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.07■□□□□ 0.96
Clrn3Q8BHH8 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Clrn3Q8BHH8 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clrn3Q8BHH8 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
Clrn3Q8BHH8 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.06■□□□□ 0.96
Clrn3Q8BHH8 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Clrn3Q8BHH8 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Clrn3Q8BHH8 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Clrn3Q8BHH8 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Clrn3Q8BHH8 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Clrn3Q8BHH8 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Clrn3Q8BHH8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Clrn3Q8BHH8 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Clrn3Q8BHH8 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Clrn3Q8BHH8 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clrn3Q8BHH8 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clrn3Q8BHH8 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clrn3Q8BHH8 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clrn3Q8BHH8 Mir3960-201ENSMUST00000198213 73 ntBASIC21.03■□□□□ 0.96
Clrn3Q8BHH8 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clrn3Q8BHH8 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clrn3Q8BHH8 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Clrn3Q8BHH8 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Clrn3Q8BHH8 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Clrn3Q8BHH8 AC167019.3-201ENSMUST00000228225 1266 ntBASIC21.02■□□□□ 0.96
Clrn3Q8BHH8 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Clrn3Q8BHH8 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Clrn3Q8BHH8 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Clrn3Q8BHH8 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Clrn3Q8BHH8 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Clrn3Q8BHH8 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Clrn3Q8BHH8 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Clrn3Q8BHH8 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21■□□□□ 0.95
Clrn3Q8BHH8 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21■□□□□ 0.95
Clrn3Q8BHH8 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Clrn3Q8BHH8 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Clrn3Q8BHH8 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Clrn3Q8BHH8 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clrn3Q8BHH8 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.98■□□□□ 0.95
Clrn3Q8BHH8 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clrn3Q8BHH8 Gm9812-201ENSMUST00000061934 968 ntBASIC20.98■□□□□ 0.95
Clrn3Q8BHH8 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms