Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col28a1Q2UY11 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Col28a1Q2UY11 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Col28a1Q2UY11 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.94■■□□□ 1.1
Col28a1Q2UY11 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col28a1Q2UY11 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col28a1Q2UY11 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.94■■□□□ 1.1
Col28a1Q2UY11 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col28a1Q2UY11 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Col28a1Q2UY11 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
Col28a1Q2UY11 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC21.93■■□□□ 1.1
Col28a1Q2UY11 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col28a1Q2UY11 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col28a1Q2UY11 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col28a1Q2UY11 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Col28a1Q2UY11 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC21.91■■□□□ 1.1
Col28a1Q2UY11 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.91■■□□□ 1.1
Col28a1Q2UY11 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col28a1Q2UY11 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.91■■□□□ 1.1
Col28a1Q2UY11 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Col28a1Q2UY11 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Col28a1Q2UY11 Nkain2-201ENSMUST00000092602 558 ntBASIC21.9■■□□□ 1.1
Col28a1Q2UY11 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC21.9■■□□□ 1.1
Col28a1Q2UY11 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col28a1Q2UY11 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col28a1Q2UY11 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Col28a1Q2UY11 Gm30023-201ENSMUST00000197970 889 ntBASIC21.89■■□□□ 1.09
Col28a1Q2UY11 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Col28a1Q2UY11 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
Col28a1Q2UY11 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Col28a1Q2UY11 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Col28a1Q2UY11 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Col28a1Q2UY11 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col28a1Q2UY11 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Col28a1Q2UY11 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col28a1Q2UY11 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.86■■□□□ 1.09
Col28a1Q2UY11 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
Col28a1Q2UY11 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
Col28a1Q2UY11 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.85■■□□□ 1.09
Col28a1Q2UY11 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col28a1Q2UY11 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col28a1Q2UY11 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col28a1Q2UY11 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.84■■□□□ 1.09
Col28a1Q2UY11 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col28a1Q2UY11 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Col28a1Q2UY11 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col28a1Q2UY11 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Col28a1Q2UY11 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col28a1Q2UY11 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col28a1Q2UY11 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col28a1Q2UY11 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col28a1Q2UY11 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Col28a1Q2UY11 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col28a1Q2UY11 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col28a1Q2UY11 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC21.82■■□□□ 1.08
Col28a1Q2UY11 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Col28a1Q2UY11 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col28a1Q2UY11 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
Col28a1Q2UY11 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col28a1Q2UY11 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Col28a1Q2UY11 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col28a1Q2UY11 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
Col28a1Q2UY11 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col28a1Q2UY11 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col28a1Q2UY11 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col28a1Q2UY11 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col28a1Q2UY11 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.79■■□□□ 1.08
Col28a1Q2UY11 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Col28a1Q2UY11 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col28a1Q2UY11 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col28a1Q2UY11 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col28a1Q2UY11 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col28a1Q2UY11 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col28a1Q2UY11 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col28a1Q2UY11 Gm7432-201ENSMUST00000210343 879 ntBASIC21.78■■□□□ 1.08
Col28a1Q2UY11 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Col28a1Q2UY11 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col28a1Q2UY11 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 129.2 ms