Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
Cdh11P55288 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cdh11P55288 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cdh11P55288 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cdh11P55288 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdh11P55288 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdh11P55288 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cdh11P55288 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cdh11P55288 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdh11P55288 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdh11P55288 Gm30023-201ENSMUST00000197970 889 ntBASIC20.51■□□□□ 0.87
Cdh11P55288 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdh11P55288 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdh11P55288 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdh11P55288 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cdh11P55288 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
Cdh11P55288 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdh11P55288 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdh11P55288 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.48■□□□□ 0.87
Cdh11P55288 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cdh11P55288 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cdh11P55288 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdh11P55288 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdh11P55288 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cdh11P55288 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdh11P55288 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdh11P55288 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Cdh11P55288 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cdh11P55288 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.47■□□□□ 0.87
Cdh11P55288 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Cdh11P55288 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdh11P55288 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdh11P55288 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdh11P55288 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.45■□□□□ 0.86
Cdh11P55288 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdh11P55288 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdh11P55288 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdh11P55288 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdh11P55288 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cdh11P55288 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdh11P55288 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdh11P55288 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdh11P55288 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.43■□□□□ 0.86
Cdh11P55288 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.43■□□□□ 0.86
Cdh11P55288 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdh11P55288 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdh11P55288 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.42■□□□□ 0.86
Cdh11P55288 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdh11P55288 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdh11P55288 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdh11P55288 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdh11P55288 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdh11P55288 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdh11P55288 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Cdh11P55288 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Cdh11P55288 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.4■□□□□ 0.86
Cdh11P55288 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdh11P55288 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Cdh11P55288 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Cdh11P55288 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Cdh11P55288 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdh11P55288 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdh11P55288 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdh11P55288 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Cdh11P55288 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdh11P55288 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdh11P55288 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cdh11P55288 Particl-201ENSMUST00000205370 1560 ntBASIC20.38■□□□□ 0.85
Cdh11P55288 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdh11P55288 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.38■□□□□ 0.85
Cdh11P55288 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC20.38■□□□□ 0.85
Cdh11P55288 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdh11P55288 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.38■□□□□ 0.85
Cdh11P55288 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.37■□□□□ 0.85
Cdh11P55288 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.37■□□□□ 0.85
Cdh11P55288 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
Cdh11P55288 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cdh11P55288 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cdh11P55288 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.37■□□□□ 0.85
Cdh11P55288 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Cdh11P55288 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdh11P55288 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdh11P55288 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdh11P55288 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
Cdh11P55288 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdh11P55288 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Cdh11P55288 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdh11P55288 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Cdh11P55288 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdh11P55288 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Cdh11P55288 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdh11P55288 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdh11P55288 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.35■□□□□ 0.85
Cdh11P55288 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cdh11P55288 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Cdh11P55288 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cdh11P55288 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cdh11P55288 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Cdh11P55288 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Cdh11P55288 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms