Protein–RNA interactions for Protein: B9EKX1

Ptchd4, Patched domain-containing protein 4, mousemouse

Predictions only

Length 904 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd4B9EKX1 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
Ptchd4B9EKX1 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Ptchd4B9EKX1 Gm5067-201ENSMUST00000170449 1009 ntBASIC24.83■■□□□ 1.57
Ptchd4B9EKX1 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC24.82■■□□□ 1.56
Ptchd4B9EKX1 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Ptchd4B9EKX1 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Ptchd4B9EKX1 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Ptchd4B9EKX1 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Ptchd4B9EKX1 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Ptchd4B9EKX1 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
Ptchd4B9EKX1 Gm10420-201ENSMUST00000121713 882 ntBASIC24.81■■□□□ 1.56
Ptchd4B9EKX1 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC24.81■■□□□ 1.56
Ptchd4B9EKX1 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
Ptchd4B9EKX1 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC24.8■■□□□ 1.56
Ptchd4B9EKX1 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Ptchd4B9EKX1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ptchd4B9EKX1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ptchd4B9EKX1 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Ptchd4B9EKX1 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
Ptchd4B9EKX1 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Ptchd4B9EKX1 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Ptchd4B9EKX1 Gm44428-201ENSMUST00000204474 874 ntBASIC24.77■■□□□ 1.56
Ptchd4B9EKX1 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ptchd4B9EKX1 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ptchd4B9EKX1 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
Ptchd4B9EKX1 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ptchd4B9EKX1 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC24.75■■□□□ 1.55
Ptchd4B9EKX1 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
Ptchd4B9EKX1 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ptchd4B9EKX1 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Ptchd4B9EKX1 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC24.73■■□□□ 1.55
Ptchd4B9EKX1 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC24.73■■□□□ 1.55
Ptchd4B9EKX1 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ptchd4B9EKX1 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Ptchd4B9EKX1 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Ptchd4B9EKX1 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC24.72■■□□□ 1.55
Ptchd4B9EKX1 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ptchd4B9EKX1 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC24.7■■□□□ 1.55
Ptchd4B9EKX1 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Ptchd4B9EKX1 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
Ptchd4B9EKX1 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ptchd4B9EKX1 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC24.68■■□□□ 1.54
Ptchd4B9EKX1 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Ptchd4B9EKX1 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ptchd4B9EKX1 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ptchd4B9EKX1 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
Ptchd4B9EKX1 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ptchd4B9EKX1 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ptchd4B9EKX1 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ptchd4B9EKX1 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ptchd4B9EKX1 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
Ptchd4B9EKX1 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Ptchd4B9EKX1 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ptchd4B9EKX1 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ptchd4B9EKX1 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Ptchd4B9EKX1 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
Ptchd4B9EKX1 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.65■■□□□ 1.54
Ptchd4B9EKX1 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC24.65■■□□□ 1.54
Ptchd4B9EKX1 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
Ptchd4B9EKX1 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ptchd4B9EKX1 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
Ptchd4B9EKX1 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
Ptchd4B9EKX1 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.64■■□□□ 1.54
Ptchd4B9EKX1 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
Ptchd4B9EKX1 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC24.64■■□□□ 1.54
Ptchd4B9EKX1 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Ptchd4B9EKX1 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Ptchd4B9EKX1 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Ptchd4B9EKX1 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
Ptchd4B9EKX1 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
Ptchd4B9EKX1 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ptchd4B9EKX1 Gm5921-201ENSMUST00000075898 882 ntBASIC24.61■■□□□ 1.53
Ptchd4B9EKX1 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ptchd4B9EKX1 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Ptchd4B9EKX1 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ptchd4B9EKX1 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC24.6■■□□□ 1.53
Ptchd4B9EKX1 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ptchd4B9EKX1 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC24.59■■□□□ 1.53
Ptchd4B9EKX1 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ptchd4B9EKX1 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ptchd4B9EKX1 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ptchd4B9EKX1 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Ptchd4B9EKX1 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Ptchd4B9EKX1 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ptchd4B9EKX1 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Ptchd4B9EKX1 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ptchd4B9EKX1 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Ptchd4B9EKX1 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ptchd4B9EKX1 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ptchd4B9EKX1 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ptchd4B9EKX1 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ptchd4B9EKX1 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC24.54■■□□□ 1.52
Ptchd4B9EKX1 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ptchd4B9EKX1 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ptchd4B9EKX1 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Ptchd4B9EKX1 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Ptchd4B9EKX1 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Ptchd4B9EKX1 AC122428.3-201ENSMUST00000215551 2290 ntBASIC24.52■■□□□ 1.52
Ptchd4B9EKX1 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Ptchd4B9EKX1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms