Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a4A2AX52 Gm9959-201ENSMUST00000068277 390 ntBASIC19.39■□□□□ 0.69
Col6a4A2AX52 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a4A2AX52 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
Col6a4A2AX52 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a4A2AX52 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Col6a4A2AX52 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a4A2AX52 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a4A2AX52 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.38■□□□□ 0.69
Col6a4A2AX52 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a4A2AX52 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a4A2AX52 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.37■□□□□ 0.69
Col6a4A2AX52 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a4A2AX52 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Col6a4A2AX52 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a4A2AX52 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Col6a4A2AX52 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a4A2AX52 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.36■□□□□ 0.69
Col6a4A2AX52 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Col6a4A2AX52 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a4A2AX52 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a4A2AX52 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.35■□□□□ 0.69
Col6a4A2AX52 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.35■□□□□ 0.69
Col6a4A2AX52 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a4A2AX52 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.34■□□□□ 0.69
Col6a4A2AX52 AC153911.1-201ENSMUST00000220378 758 ntBASIC19.34■□□□□ 0.69
Col6a4A2AX52 Gm15820-201ENSMUST00000201566 728 ntBASIC19.33■□□□□ 0.69
Col6a4A2AX52 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Col6a4A2AX52 Gm14121-201ENSMUST00000121441 1380 ntBASIC19.33■□□□□ 0.68
Col6a4A2AX52 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col6a4A2AX52 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col6a4A2AX52 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col6a4A2AX52 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col6a4A2AX52 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col6a4A2AX52 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col6a4A2AX52 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Col6a4A2AX52 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.3■□□□□ 0.68
Col6a4A2AX52 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Col6a4A2AX52 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col6a4A2AX52 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col6a4A2AX52 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.29■□□□□ 0.68
Col6a4A2AX52 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Col6a4A2AX52 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col6a4A2AX52 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Col6a4A2AX52 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a4A2AX52 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Col6a4A2AX52 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a4A2AX52 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC19.28■□□□□ 0.68
Col6a4A2AX52 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a4A2AX52 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col6a4A2AX52 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a4A2AX52 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
Col6a4A2AX52 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col6a4A2AX52 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col6a4A2AX52 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col6a4A2AX52 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.27■□□□□ 0.68
Col6a4A2AX52 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
Col6a4A2AX52 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.27■□□□□ 0.67
Col6a4A2AX52 Gm44428-201ENSMUST00000204474 874 ntBASIC19.26■□□□□ 0.67
Col6a4A2AX52 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col6a4A2AX52 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
Col6a4A2AX52 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.26■□□□□ 0.67
Col6a4A2AX52 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col6a4A2AX52 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC19.26■□□□□ 0.67
Col6a4A2AX52 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.25■□□□□ 0.67
Col6a4A2AX52 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.25■□□□□ 0.67
Col6a4A2AX52 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Col6a4A2AX52 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col6a4A2AX52 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col6a4A2AX52 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Col6a4A2AX52 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col6a4A2AX52 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.24■□□□□ 0.67
Col6a4A2AX52 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col6a4A2AX52 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col6a4A2AX52 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a4A2AX52 Zxda-201ENSMUST00000117281 2621 ntBASIC19.23■□□□□ 0.67
Col6a4A2AX52 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Col6a4A2AX52 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a4A2AX52 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a4A2AX52 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col6a4A2AX52 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col6a4A2AX52 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.22■□□□□ 0.67
Col6a4A2AX52 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a4A2AX52 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a4A2AX52 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a4A2AX52 Gm43445-201ENSMUST00000198564 2091 ntBASIC19.21■□□□□ 0.67
Col6a4A2AX52 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a4A2AX52 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.21■□□□□ 0.67
Col6a4A2AX52 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Col6a4A2AX52 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Col6a4A2AX52 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.2■□□□□ 0.66
Col6a4A2AX52 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a4A2AX52 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a4A2AX52 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.2■□□□□ 0.66
Col6a4A2AX52 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a4A2AX52 AC153504.1-201ENSMUST00000218379 2290 ntBASIC19.2■□□□□ 0.66
Col6a4A2AX52 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a4A2AX52 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a4A2AX52 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Col6a4A2AX52 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms