Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ddx55Q6ZPL9 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC26.96■■□□□ 1.91
Ddx55Q6ZPL9 AC153911.1-201ENSMUST00000220378 758 ntBASIC26.96■■□□□ 1.91
Ddx55Q6ZPL9 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Ddx55Q6ZPL9 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
Ddx55Q6ZPL9 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC26.95■■□□□ 1.9
Ddx55Q6ZPL9 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Ddx55Q6ZPL9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC26.94■■□□□ 1.9
Ddx55Q6ZPL9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Ddx55Q6ZPL9 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC26.94■■□□□ 1.9
Ddx55Q6ZPL9 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ddx55Q6ZPL9 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Ddx55Q6ZPL9 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ddx55Q6ZPL9 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Ddx55Q6ZPL9 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Ddx55Q6ZPL9 Terc-201ENSMUST00000082862 423 ntBASIC26.92■■□□□ 1.9
Ddx55Q6ZPL9 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Ddx55Q6ZPL9 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Ddx55Q6ZPL9 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC26.9■■□□□ 1.9
Ddx55Q6ZPL9 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ddx55Q6ZPL9 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
Ddx55Q6ZPL9 Gm14121-201ENSMUST00000121441 1380 ntBASIC26.89■■□□□ 1.9
Ddx55Q6ZPL9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Ddx55Q6ZPL9 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ddx55Q6ZPL9 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC26.87■■□□□ 1.89
Ddx55Q6ZPL9 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC26.87■■□□□ 1.89
Ddx55Q6ZPL9 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.87■■□□□ 1.89
Ddx55Q6ZPL9 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
Ddx55Q6ZPL9 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ddx55Q6ZPL9 Gm22567-201ENSMUST00000175542 342 ntBASIC26.86■■□□□ 1.89
Ddx55Q6ZPL9 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Ddx55Q6ZPL9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ddx55Q6ZPL9 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Ddx55Q6ZPL9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.85■■□□□ 1.89
Ddx55Q6ZPL9 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddx55Q6ZPL9 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Ddx55Q6ZPL9 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
Ddx55Q6ZPL9 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
Ddx55Q6ZPL9 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
Ddx55Q6ZPL9 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Ddx55Q6ZPL9 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Ddx55Q6ZPL9 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC26.82■■□□□ 1.88
Ddx55Q6ZPL9 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
Ddx55Q6ZPL9 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Ddx55Q6ZPL9 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Ddx55Q6ZPL9 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.8■■□□□ 1.88
Ddx55Q6ZPL9 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Ddx55Q6ZPL9 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC26.8■■□□□ 1.88
Ddx55Q6ZPL9 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Ddx55Q6ZPL9 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddx55Q6ZPL9 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
Ddx55Q6ZPL9 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddx55Q6ZPL9 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC26.78■■□□□ 1.88
Ddx55Q6ZPL9 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Ddx55Q6ZPL9 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Ddx55Q6ZPL9 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.75■■□□□ 1.87
Ddx55Q6ZPL9 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.75■■□□□ 1.87
Ddx55Q6ZPL9 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx55Q6ZPL9 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx55Q6ZPL9 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
Ddx55Q6ZPL9 Gm15546-201ENSMUST00000122095 826 ntBASIC26.74■■□□□ 1.87
Ddx55Q6ZPL9 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
Ddx55Q6ZPL9 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Ddx55Q6ZPL9 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Ddx55Q6ZPL9 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
Ddx55Q6ZPL9 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Ddx55Q6ZPL9 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC26.72■■□□□ 1.87
Ddx55Q6ZPL9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Ddx55Q6ZPL9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
Ddx55Q6ZPL9 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Ddx55Q6ZPL9 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Ddx55Q6ZPL9 Gm15039-201ENSMUST00000118914 875 ntBASIC26.71■■□□□ 1.87
Ddx55Q6ZPL9 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC26.71■■□□□ 1.87
Ddx55Q6ZPL9 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC26.71■■□□□ 1.87
Ddx55Q6ZPL9 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Ddx55Q6ZPL9 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC26.7■■□□□ 1.86
Ddx55Q6ZPL9 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
Ddx55Q6ZPL9 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Ddx55Q6ZPL9 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Ddx55Q6ZPL9 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ddx55Q6ZPL9 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC26.67■■□□□ 1.86
Ddx55Q6ZPL9 Gm44428-201ENSMUST00000204474 874 ntBASIC26.67■■□□□ 1.86
Ddx55Q6ZPL9 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC26.67■■□□□ 1.86
Ddx55Q6ZPL9 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ddx55Q6ZPL9 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Ddx55Q6ZPL9 Gm5522-201ENSMUST00000189483 1242 ntBASIC26.66■■□□□ 1.86
Ddx55Q6ZPL9 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ddx55Q6ZPL9 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Ddx55Q6ZPL9 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Ddx55Q6ZPL9 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
Ddx55Q6ZPL9 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ddx55Q6ZPL9 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Ddx55Q6ZPL9 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Ddx55Q6ZPL9 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC26.64■■□□□ 1.86
Ddx55Q6ZPL9 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Ddx55Q6ZPL9 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Ddx55Q6ZPL9 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ddx55Q6ZPL9 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Ddx55Q6ZPL9 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Ddx55Q6ZPL9 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms