Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Six4Q61321 Gm4419-202ENSMUST00000226239 1431 ntBASIC23.34■■□□□ 1.33
Six4Q61321 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Six4Q61321 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Six4Q61321 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
Six4Q61321 AC167019.3-201ENSMUST00000228225 1266 ntBASIC23.34■■□□□ 1.33
Six4Q61321 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Six4Q61321 Gm13889-201ENSMUST00000099689 1386 ntBASIC23.33■■□□□ 1.33
Six4Q61321 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Six4Q61321 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Six4Q61321 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Six4Q61321 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Six4Q61321 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
Six4Q61321 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Six4Q61321 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Six4Q61321 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Six4Q61321 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Six4Q61321 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC23.32■■□□□ 1.32
Six4Q61321 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC23.32■■□□□ 1.32
Six4Q61321 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Six4Q61321 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Six4Q61321 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Six4Q61321 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Six4Q61321 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Six4Q61321 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Six4Q61321 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Six4Q61321 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Six4Q61321 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Six4Q61321 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Six4Q61321 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Six4Q61321 Gm5987-201ENSMUST00000196433 1151 ntBASIC23.29■■□□□ 1.32
Six4Q61321 Gm45364-201ENSMUST00000210883 159 ntBASIC23.29■■□□□ 1.32
Six4Q61321 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC23.29■■□□□ 1.32
Six4Q61321 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Six4Q61321 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Six4Q61321 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC23.28■■□□□ 1.32
Six4Q61321 Mir3960-201ENSMUST00000198213 73 ntBASIC23.28■■□□□ 1.32
Six4Q61321 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC23.28■■□□□ 1.32
Six4Q61321 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Six4Q61321 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Six4Q61321 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Six4Q61321 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC23.27■■□□□ 1.32
Six4Q61321 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Six4Q61321 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Six4Q61321 AC154454.1-201ENSMUST00000225253 216 ntBASIC23.26■■□□□ 1.31
Six4Q61321 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
Six4Q61321 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Six4Q61321 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Six4Q61321 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Six4Q61321 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Six4Q61321 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Six4Q61321 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Six4Q61321 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Six4Q61321 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Six4Q61321 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Six4Q61321 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Six4Q61321 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Six4Q61321 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Six4Q61321 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Six4Q61321 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Six4Q61321 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Six4Q61321 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC23.23■■□□□ 1.31
Six4Q61321 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC23.22■■□□□ 1.31
Six4Q61321 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC23.22■■□□□ 1.31
Six4Q61321 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Six4Q61321 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Six4Q61321 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Six4Q61321 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Six4Q61321 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Six4Q61321 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC23.2■■□□□ 1.3
Six4Q61321 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Six4Q61321 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Six4Q61321 Gm12818-201ENSMUST00000117562 1349 ntBASIC23.19■■□□□ 1.3
Six4Q61321 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Six4Q61321 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC23.19■■□□□ 1.3
Six4Q61321 Gm6311-201ENSMUST00000073790 878 ntBASIC23.19■■□□□ 1.3
Six4Q61321 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC23.19■■□□□ 1.3
Six4Q61321 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC23.19■■□□□ 1.3
Six4Q61321 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
Six4Q61321 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Six4Q61321 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Six4Q61321 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Six4Q61321 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Six4Q61321 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC23.18■■□□□ 1.3
Six4Q61321 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
Six4Q61321 Gm9812-201ENSMUST00000061934 968 ntBASIC23.17■■□□□ 1.3
Six4Q61321 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Six4Q61321 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Six4Q61321 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC23.15■■□□□ 1.3
Six4Q61321 AC122317.2-201ENSMUST00000218708 1248 ntBASIC23.15■■□□□ 1.3
Six4Q61321 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC23.15■■□□□ 1.3
Six4Q61321 Pkd1-207ENSMUST00000228550 1050 ntBASIC23.15■■□□□ 1.3
Six4Q61321 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
Six4Q61321 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Six4Q61321 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Six4Q61321 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC23.13■■□□□ 1.29
Six4Q61321 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Six4Q61321 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Six4Q61321 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Six4Q61321 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms