Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Cd40lgP27548 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cd40lgP27548 Gm4799-201ENSMUST00000095396 657 ntBASIC20.93■□□□□ 0.94
Cd40lgP27548 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.93■□□□□ 0.94
Cd40lgP27548 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cd40lgP27548 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.92■□□□□ 0.94
Cd40lgP27548 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.92■□□□□ 0.94
Cd40lgP27548 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cd40lgP27548 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cd40lgP27548 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Cd40lgP27548 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cd40lgP27548 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cd40lgP27548 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cd40lgP27548 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.91■□□□□ 0.94
Cd40lgP27548 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cd40lgP27548 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.91■□□□□ 0.94
Cd40lgP27548 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Cd40lgP27548 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
Cd40lgP27548 Gm37136-201ENSMUST00000194368 194 ntBASIC20.9■□□□□ 0.94
Cd40lgP27548 Gm6311-201ENSMUST00000073790 878 ntBASIC20.89■□□□□ 0.93
Cd40lgP27548 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cd40lgP27548 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cd40lgP27548 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Cd40lgP27548 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Cd40lgP27548 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cd40lgP27548 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.88■□□□□ 0.93
Cd40lgP27548 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Cd40lgP27548 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cd40lgP27548 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cd40lgP27548 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cd40lgP27548 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cd40lgP27548 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.87■□□□□ 0.93
Cd40lgP27548 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.87■□□□□ 0.93
Cd40lgP27548 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cd40lgP27548 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cd40lgP27548 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cd40lgP27548 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cd40lgP27548 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cd40lgP27548 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Cd40lgP27548 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Cd40lgP27548 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cd40lgP27548 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cd40lgP27548 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cd40lgP27548 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cd40lgP27548 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cd40lgP27548 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Cd40lgP27548 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Cd40lgP27548 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cd40lgP27548 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cd40lgP27548 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cd40lgP27548 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.8■□□□□ 0.92
Cd40lgP27548 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.8■□□□□ 0.92
Cd40lgP27548 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Cd40lgP27548 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cd40lgP27548 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.79■□□□□ 0.92
Cd40lgP27548 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cd40lgP27548 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.79■□□□□ 0.92
Cd40lgP27548 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cd40lgP27548 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cd40lgP27548 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cd40lgP27548 Mir3960-201ENSMUST00000198213 73 ntBASIC20.78■□□□□ 0.92
Cd40lgP27548 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cd40lgP27548 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cd40lgP27548 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cd40lgP27548 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Cd40lgP27548 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Cd40lgP27548 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Cd40lgP27548 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cd40lgP27548 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.76■□□□□ 0.91
Cd40lgP27548 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.76■□□□□ 0.91
Cd40lgP27548 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cd40lgP27548 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cd40lgP27548 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cd40lgP27548 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cd40lgP27548 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cd40lgP27548 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.75■□□□□ 0.91
Cd40lgP27548 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Cd40lgP27548 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.75■□□□□ 0.91
Cd40lgP27548 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cd40lgP27548 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cd40lgP27548 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd40lgP27548 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Cd40lgP27548 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd40lgP27548 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.74■□□□□ 0.91
Cd40lgP27548 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd40lgP27548 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd40lgP27548 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cd40lgP27548 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.72■□□□□ 0.91
Cd40lgP27548 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cd40lgP27548 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.72■□□□□ 0.91
Cd40lgP27548 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cd40lgP27548 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.72■□□□□ 0.91
Cd40lgP27548 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cd40lgP27548 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cd40lgP27548 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.71■□□□□ 0.91
Cd40lgP27548 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cd40lgP27548 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cd40lgP27548 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd40lgP27548 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd40lgP27548 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 165.6 ms