RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 TCRBV7S3A2A0A539 114 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 DPM1O60762 260 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 AP2A2O94973 939 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 GSTM1P09488 218 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 MGAT1P26572 445 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 PRDX3P30048 256 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 NSG1P42857 185 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 PREPP48147 710 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 GSTM4Q03013 218 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 AARS2Q5JTZ9 985 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 ZNF449Q6P9G9 518 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 FAM198BQ6UWH4 519 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 MED25Q71SY5 747 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 PPIL6Q8IXY8 311 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 TMEM102Q8N9M5 508 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 FDCSPQ8NFU4 85 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 OR1L3Q8NH93 324 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 LCN9Q8WX39 176 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 DPH2Q9BQC3 489 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 KIFC1Q9BW19 673 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 SRMSQ9H3Y6 488 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 TFB2MQ9H5Q4 396 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 CUEDC1Q9NWM3 386 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 SAMD15Q9P1V8 674 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 FAM8A1Q9UBU6 413 aa16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 PLEKHB1Q9UF11 243 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 G3BP2Q9UN86 482 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 USP9YO00507 2555 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-203ENST00000594298 GSAPA4D1B5 854 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 SDR42E2A6NKP2 422 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 TMEM150CB9EJG8 249 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 GOT2P00505 430 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 VARSP26640 1264 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 FOXN2P32314 431 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 CD151P48509 253 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 CDKN1CP49918 316 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 ITGA1P56199 1179 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 PTK6Q13882 451 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 DBN1Q16643 649 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 ZNF658BQ4V348 819 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 JMJD6Q6NYC1 403 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 SYT10Q6XYQ8 523 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 KLHL7Q8IXQ5 586 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 SYTL1Q8IYJ3 562 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 C17orf53Q8N3J3 647 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 SSC4DQ8WTU2 575 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 OR52A5Q9H2C5 316 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 COG4Q9H9E3 785 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 ACTR5Q9H9F9 607 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 SLC2A6Q9UGQ3 507 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 SERTAD3Q9UJW9 196 aa16.98■□□□□ 0.31
SHKBP1-203ENST00000594298 BTN3A3O00478 584 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 BTN3A1O00481 513 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 PFDN6O15212 129 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 MAP3K7O43318 606 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 ST6GAL1P15907 406 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 PAMP19021 973 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 CYP2A7P20853 494 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 RRADP55042 308 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 DR1Q01658 176 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 DHX34Q14147 1143 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 NCF4Q15080 339 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 INPP5JQ15735 1006 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 ANKRD22Q5VYY1 191 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 CASC4Q6P4E1 433 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 ZNF534Q76KX8 674 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 PIANPQ8IYJ0 282 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 ZBTB2Q8N680 514 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 NAT8LQ8N9F0 302 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 Q8NA96 180 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 TRIM44Q96DX7 344 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 ZNF778Q96MU6 729 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 FERD3LQ96RJ6 166 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 SMAD5Q99717 465 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 DHRS4Q9BTZ2 278 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 NUDT9Q9BW91 350 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 TREX1Q9NSU2 369 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 CATSPERZQ9NTU4 200 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 SYBUQ9NX95 663 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 SOX13Q9UN79 622 aa16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 USP9XQ93008 2570 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-203ENST00000594298 OR51F1A6NGY5 319 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 E7EQ34 232 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 SMAPO00193 183 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 IFRD1O00458 451 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 DNALI1O14645 258 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 NDC80O14777 642 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 SEMA7AO75326 666 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 HBQ1P09105 142 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 OR56A5P0C7T3 313 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 TTPAP49638 278 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 CRADDP78560 199 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 RPA4Q13156 261 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 ZNF385CQ66K41 422 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 PACS1Q6VY07 963 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 SDCCAG8Q86SQ7 713 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 CAND1Q86VP6 1230 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 HOOK3Q86VS8 718 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 AMIGO1Q86WK6 493 aa16.96■□□□□ 0.31
SHKBP1-203ENST00000594298 MPP5Q8N3R9 675 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 187.5 ms