RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GSTA5Q7RTV2 222 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 PTRH1Q86Y79 214 aaKnown RBP18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 DSELQ8IZU8 1212 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 MPP5Q8N3R9 675 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 GLIS1Q8NBF1 620 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 CLIP3Q96DZ5 547 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 XKR8Q9H6D3 395 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 AKIRIN1Q9H9L7 192 aaPredicted RBP18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 CATSPERZQ9NTU4 200 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 E7EQ34 232 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 PRMT5O14744 637 aaPredicted RBP18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 ZIC2O95409 532 aaPredicted RBP18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 APOA4P06727 396 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 CHRM5P08912 532 aaPredicted RBP18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 ZSCAN5DPP0CG00 497 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 RORAP35398 523 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 CASRP41180 1078 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 PRUNE1Q86TP1 453 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 LRRC6Q86X45 466 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 GPR135Q8IZ08 494 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 SLC22A15Q8IZD6 547 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 SLC38A9Q8NBW4 561 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 OR1L3Q8NH93 324 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 N4BP2L2Q92802 583 aaPredicted RBP18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 AP1M1Q9BXS5 423 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 NLNQ9BYT8 704 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 SLC7A5P2Q9GIP4 190 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 CHST8Q9H2A9 424 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 ACTR5Q9H9F9 607 aaPredicted RBP18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 ZNF71Q9NQZ8 489 aaPredicted RBP18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 CHRAC1Q9NRG0 131 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 TDRKHQ9Y2W6 561 aaKnown RBP18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 AP1M2Q9Y6Q5 423 aa18.45■□□□□ 0.54
CCDC28A-203ENST00000617445 KPNA5O15131 536 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 CD3EAPO15446 510 aaKnown RBP18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 GPC4O75487 556 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 CCR7P32248 378 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 BASP1P80723 227 aaKnown RBP18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 ABRQ12979 859 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 KIR2DS3Q14952 304 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 TMED2Q15363 201 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 ZNF789Q5FWF6 425 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 C19orf47Q8N9M1 422 aaKnown RBP18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 PANX3Q96QZ0 392 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 OR2A14Q96R47 310 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 C17orf62Q9BQA9 187 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 MRM3Q9HC36 420 aaKnown RBP18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 TREX1Q9NSU2 369 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 MRFAP1Q9Y605 127 aa18.44■□□□□ 0.54
CCDC28A-203ENST00000617445 CEP104O60308 925 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 SLCO2B1O94956 709 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 UGT2B7P16662 529 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 SESN2P58004 480 aaPredicted RBP18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 SARNPP82979 210 aaKnown RBP18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 TLE1Q04724 770 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 HSPA14Q0VDF9 509 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 KLRB1Q12918 225 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 SLC5A12Q1EHB4 618 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 UNC5DQ6UXZ4 953 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 CDHR3Q6ZTQ4 885 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 SLC22A18Q96BI1 424 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 TRIM4Q9C037 500 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 PCMTD2Q9NV79 361 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 TLK1Q9UKI8 766 aa18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 SNRNP200O75643 2136 aaKnown RBP18.43■□□□□ 0.54
CCDC28A-203ENST00000617445 MED13Q9UHV7 2174 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 UBR5O95071 2799 aaPredicted RBP18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 RP1L1Q8IWN7 2480 aaPredicted RBP18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 A0A0J9YY10 115 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 PFDN6O15212 129 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 CD63P08962 238 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 PVRP15151 417 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 TPSB2P20231 275 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 AGXTP21549 392 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 AOAHP28039 575 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 RAB28P51157 221 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 SEMA3AQ14563 771 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 TPSAB1Q15661 275 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 KYNUQ16719 465 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 PTRHD1Q6GMV3 140 aaKnown RBP18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 LRRC8BQ6P9F7 803 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 NAPRTQ6XQN6 538 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 TMEM135Q86UB9 458 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 SYTL1Q8IYJ3 562 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 GSDMBQ8TAX9 411 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 NRTNQ99748 197 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 DHRS4Q9BTZ2 278 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 KIFC1Q9BW19 673 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 GNPTGQ9UJJ9 305 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 SNX7Q9UNH6 387 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 CDYLQ9Y232 598 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 TP53TG5Q9Y2B4 290 aa18.42■□□□□ 0.54
CCDC28A-203ENST00000617445 C9J4A7 227 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 PYCARD-AS1I3L0S3 204 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 ZNF749O43361 778 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 NDUFS3O75489 264 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 TPBGLP0DKB5 382 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 RPS3P23396 243 aaKnown RBP eCLIP18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 RPS18P62269 152 aaKnown RBP18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 PRAMEF17Q5VTA0 474 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms