RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SERPINB10P48595 397 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 PLCXD2Q0VAA5 305 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 HSPB3Q12988 150 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 AP1ARQ63HQ0 302 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ARHGAP17Q68EM7 881 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ARL9Q6T311 187 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 RBM12BQ8IXT5 1001 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 CA5BP1Q8WTZ4 195 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 GATAD2BQ8WXI9 593 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 FIG4Q92562 907 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 TRNT1Q96Q11 434 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 APOOQ9BUR5 198 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 RIBC2Q9H4K1 309 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 MINDY3Q9H8M7 445 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SEC61A2Q9H9S3 476 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 CDH20Q9HBT6 801 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 NPIPA5E9PKD4 350 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 C6P13671 934 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 EEFSECP57772 596 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 CHRNB3Q05901 458 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC29A2Q14542 456 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 AAGABQ6PD74 315 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 GPAT4Q86UL3 456 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 CSNK1A1LQ8N752 337 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ATG16L2Q8NAA4 619 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC6A18Q96N87 628 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 XKR8Q9H6D3 395 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 MVB12BQ9H7P6 319 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 NPIPA1Q9UND3 350 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 CCDC187A0A096LP49 1063 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 A0A1W2PQJ5 194 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 GJE1A6NN92 205 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 GLULP15104 373 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 RPL38P63173 70 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 TMED1Q13445 227 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 HEPACAMQ14CZ8 416 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 LEXMQ3ZCV2 418 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 PMF1Q6P1K2 205 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 TMEM207Q6UWW9 146 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 KCNK18Q7Z418 384 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 UTP15Q8TED0 518 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ABTB1Q969K4 478 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ZNF599Q96NL3 588 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 C12orf65Q9H3J6 166 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ETNK2Q9NVF9 386 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SCN3BQ9NY72 215 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 B4GALT6Q9UBX8 382 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 TMPRSS11EQ9UL52 423 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 BOKQ9UMX3 212 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 PCDHGA2Q9Y5H1 932 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 PHGDHO43175 533 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 GPR32O75388 356 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 GCH1P30793 250 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 PTSQ03393 145 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 TRIM71Q2Q1W2 868 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 EGFLAMQ63HQ2 1017 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 SEL1L3Q68CR1 1132 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 RSPO2Q6UXX9 243 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 C6orf120Q7Z4R8 191 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 ARMC8Q8IUR7 673 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 ALDH16A1Q8IZ83 802 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 PHOSPHO1Q8TCT1 267 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 KCNV2Q8TDN2 545 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 RNF157Q96PX1 679 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 TMEM216Q9P0N5 145 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 YBX2Q9Y2T7 364 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 TTC24A2A3L6 582 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 GNB5O14775 395 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 FAM163BP0C2L3 166 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 OR12D1P0DN82 309 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 IRX1P78414 480 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 RUNX1T1Q06455 604 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 FUT2Q10981 343 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 OVGP1Q12889 678 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 TOP3AQ13472 1001 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 TIGD6Q17RP2 521 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 DCUN1D3Q8IWE4 304 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 OR1N1Q8NGS0 311 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 OR8K5Q8NH50 307 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 THOC3Q96J01 351 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 MPP4Q96JB8 637 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 FAM84AQ96KN4 292 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 ZBP1Q9H171 429 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC25A51Q9H1U9 297 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 EPHX3Q9H6B9 360 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 ESYT3A0FGR9 886 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 MATN3O15232 486 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 SCO2O43819 266 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 SEC24DO94855 1032 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 SERPINA3P01011 423 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 CST3P01034 146 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 PRG2P13727 222 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 GNALP38405 381 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 ARHGDIBP52566 201 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 RFTN2Q52LD8 501 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 OTUD3Q5T2D3 398 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 TMEM225Q6GV28 225 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 DEF8Q6ZN54 512 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 KLHDC9Q8NEP7 349 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 PCDH19Q8TAB3 1148 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms