RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GPR19Q15760 415 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 AARS2Q5JTZ9 985 aaKnown RBP18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 ZNF517Q6ZMY9 492 aaPredicted RBP18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 CPT1BQ92523 772 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 TWSG1Q9GZX9 223 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 CLMPQ9H6B4 373 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 EIF2B3Q9NR50 452 aaKnown RBP18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 HOMER3Q9NSC5 361 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 SERTAD3Q9UJW9 196 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 ANAPC2Q9UJX6 822 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 ASF1AQ9Y294 204 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 TCAF1Q9Y4C2 921 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 PRSS21Q9Y6M0 314 aa18.5■□□□□ 0.55
CCDC28A-203ENST00000617445 ASH1LQ9NR48 2969 aaKnown RBP18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 SLC5A10A0PJK1 596 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 OR51F1A6NGY5 319 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 PTPN4P29074 926 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 PRKG2Q13237 762 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 SYTL3Q4VX76 610 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 FASTKD1Q53R41 847 aaKnown RBP18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 ATP1A1-AS1Q5TC04 95 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 SYVN1Q86TM6 617 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 HOOK3Q86VS8 718 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 ADGRF3Q8IZF5 1079 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 PPHLN1Q8NEY8 458 aaKnown RBP18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 TRIM58Q8NG06 486 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 OR6P1Q8NGX9 317 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 OR5K2Q8NHB8 316 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 THAP4Q8WY91 577 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 ABHD17AQ96GS6 310 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 PPM1MQ96MI6 270 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 HGH1Q9BTY7 390 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 ACTL8Q9H568 366 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 ACTR10Q9NZ32 417 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 OR6C2Q9NZP2 312 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 ANAPC5Q9UJX4 755 aa18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 FARSAQ9Y285 508 aaKnown RBP18.49■□□□□ 0.55
CCDC28A-203ENST00000617445 MKRN2OSH3BPM6 223 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 NRDCO43847 1150 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 ETS1P14921 441 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 RPL22P35268 128 aaKnown RBP18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 GRIA1P42261 906 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 NFKB2Q00653 900 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 SIX1Q15475 284 aaPredicted RBP18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 DNAJC21Q5F1R6 531 aaKnown RBP18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 PCID2Q5JVF3 399 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 IZUMO3Q5VZ72 239 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 FBXO38Q6PIJ6 1188 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 APLFQ8IW19 511 aaPredicted RBP18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 MR1Q95460 341 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 RNF31Q96EP0 1072 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 TRAPPC9Q96Q05 1148 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 CARD6Q9BX69 1037 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 TLR10Q9BXR5 811 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 IL22Q9GZX6 179 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 CHRNA10Q9GZZ6 450 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 LZTFL1Q9NQ48 299 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 SLC2A6Q9UGQ3 507 aa18.48■□□□□ 0.55
CCDC28A-203ENST00000617445 SETXQ7Z333 2677 aaKnown RBP18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 BSNQ9UPA5 3926 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 NBASA2RRP1 2371 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 CDC14CA4D256 554 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 BHMG1C9JSJ3 638 aaPredicted RBP18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 MEN1O00255 615 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 OR1I1O60431 355 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 HBQ1P09105 142 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 RAB40ALP0C0E4 278 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 ST6GAL1P15907 406 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 NPY2RP49146 381 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 TTPAP49638 278 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 PMS2P54278 862 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 CDK16Q00536 496 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 UGT8Q16880 541 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 LACTB2Q53H82 288 aaPredicted RBP18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 SPESP1Q6UW49 350 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 LRRC8AQ8IWT6 810 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 OR5AR1Q8NGP9 310 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 ASZ1Q8WWH4 475 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 TCTN2Q96GX1 697 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 ZNF778Q96MU6 729 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 DPH2Q9BQC3 489 aaPredicted RBP18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 BFARQ9NZS9 450 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 ICKQ9UPZ9 632 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 MAN2B2Q9Y2E5 1009 aa18.47■□□□□ 0.55
CCDC28A-203ENST00000617445 TMEM150CB9EJG8 249 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 RFPL1O75677 317 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 FGGP02679 453 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 RPN2P04844 631 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 FURINP09958 794 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 CYP2A7P20853 494 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 ITGA1P56199 1179 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 GPS2Q13227 327 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 BRD3Q15059 726 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 PLEKHS1Q5SXH7 462 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 ARMC3Q5W041 872 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 TCTN3Q6NUS6 607 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 FAM199XQ6PEV8 388 aaPredicted RBP18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 UNC5AQ6ZN44 842 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 MICALCLQ6ZW33 695 aa18.46■□□□□ 0.55
CCDC28A-203ENST00000617445 ZNF534Q76KX8 674 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms