RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 EML4Q9HC35 981 aaKnown RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 ST14Q9Y5Y6 855 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 USH1CQ9Y6N9 552 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 KLHL33A6NCF5 533 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 TMEM233B4DJY2 109 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 ALOX15P16050 662 aaPredicted RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 HTR1BP28222 390 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 GDF5P43026 501 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 MAPK9P45984 424 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 RABIFP47224 123 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 RPL14P50914 215 aaKnown RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 AQP5P55064 265 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 AP1S2P56377 157 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 SH2D4BQ5SQS7 431 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 FAM219BQ5XKK7 198 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 PDZD3Q86UT5 571 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 WDR75Q8IWA0 830 aaKnown RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 UBTD2Q8WUN7 234 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 RMDN2Q96LZ7 410 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 FOPNLQ96NB1 174 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 TMEM120AQ9BXJ8 343 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 ZDHHC5Q9C0B5 715 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 SEMA4BQ9NPR2 832 aaPredicted RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 WWOXQ9NZC7 414 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 PSMD13Q9UNM6 376 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 KCNK6Q9Y257 313 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 GPSM3Q9Y4H4 160 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 TNPO3Q9Y5L0 923 aaKnown RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 A0A1B0GTL3 188 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 METTL12A8MUP2 240 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 TOR1BO14657 336 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 C1orf105O95561 183 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 CATP04040 527 aaKnown RBP18.15■□□□□ 0.5
CLN3-206ENST00000360019 AOC1P19801 751 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 THOP1P52888 689 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 ARFIP2P53365 341 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 SH3BP2P78314 561 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 LCP2Q13094 533 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 CADM4Q8NFZ8 388 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 TSACCQ96A04 125 aaPredicted RBP18.15■□□□□ 0.5
CLN3-206ENST00000360019 SLC6A18Q96N87 628 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 CD244Q9BZW8 370 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 GPR27Q9NS67 375 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 KCNK4Q9NYG8 393 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 PLXND1Q9Y4D7 1925 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 ZDBF2Q9HCK1 2354 aa18.15■□□□□ 0.5
CLN3-206ENST00000360019 EML5Q05BV3 1969 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 MATN2O00339 956 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 RPL10P27635 214 aaKnown RBP18.14■□□□□ 0.5
CLN3-206ENST00000360019 MAP4P27816 1152 aaKnown RBP18.14■□□□□ 0.5
CLN3-206ENST00000360019 ZSCAN26Q16670 478 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 TSSK4Q6SA08 328 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 ANKS4BQ8N8V4 417 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 AGAP11Q8TF27 550 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 SPACA7Q96KW9 195 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 OR2M4Q96R27 311 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 HGH1Q9BTY7 390 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 PCED1AQ9H1Q7 454 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 SPATA6Q9NWH7 488 aaPredicted RBP18.14■□□□□ 0.5
CLN3-206ENST00000360019 KLQ9UEF7 1012 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 CIDEBQ9UHD4 219 aa18.14■□□□□ 0.5
CLN3-206ENST00000360019 LAMA1P25391 3075 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 PABPN1LA6NDY0 278 aaKnown RBP18.14■□□□□ 0.49
CLN3-206ENST00000360019 ERICH4A6NGS2 130 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 TNFRSF10CO14798 259 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 BCKDHBP21953 392 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 GGT5P36269 586 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 HNMTP50135 292 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 NAA20P61599 178 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 RPL6Q02878 288 aaKnown RBP18.14■□□□□ 0.49
CLN3-206ENST00000360019 GOLGA7Q7Z5G4 137 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 FBXO15Q8NCQ5 510 aaPredicted RBP18.14■□□□□ 0.49
CLN3-206ENST00000360019 MAPK15Q8TD08 544 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 EBF4Q9BQW3 602 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 SIKE1Q9BRV8 207 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 OSGEPL1Q9H4B0 414 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 MID1IP1Q9NPA3 183 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 ZNF225Q9UK10 706 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 ACSL5Q9ULC5 683 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 WDR37Q9Y2I8 494 aa18.14■□□□□ 0.49
CLN3-206ENST00000360019 ABCA7Q8IZY2 2146 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 DMDP11532 3685 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 DCXO43602 365 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 CCNT2O60583 730 aaKnown RBP18.13■□□□□ 0.49
CLN3-206ENST00000360019 CD27P26842 260 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 PRDX3P30048 256 aaKnown RBP18.13■□□□□ 0.49
CLN3-206ENST00000360019 SLC6A12P48065 614 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 CLCNKAP51800 687 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 ALG11Q2TAA5 492 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 USP39Q53GS9 565 aaKnown RBP18.13■□□□□ 0.49
CLN3-206ENST00000360019 VWA5B1Q5TIE3 1220 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 UNC5DQ6UXZ4 953 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 RD3Q7Z3Z2 195 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 TCAIMQ8N3R3 496 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 FBXL8Q96CD0 374 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 PKP4Q99569 1192 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 WWP1Q9H0M0 922 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 CAAP1Q9H8G2 361 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 ASF1AQ9Y294 204 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms