RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 KLHL42Q9P2K6 505 aa14.62□□□□□ -0.07
NUP54-213ENST00000513352 CPNE7Q9UBL6 633 aa14.62□□□□□ -0.07
NUP54-213ENST00000513352 TBK1Q9UHD2 729 aa14.62□□□□□ -0.07
NUP54-213ENST00000513352 SLC24A2Q9UI40 661 aa14.62□□□□□ -0.07
NUP54-213ENST00000513352 ZNF180Q9UJW8 692 aa14.62□□□□□ -0.07
NUP54-213ENST00000513352 RUVBL2Q9Y230 463 aaKnown RBP14.62□□□□□ -0.07
NUP54-213ENST00000513352 CDYLQ9Y232 598 aa14.62□□□□□ -0.07
NUP54-213ENST00000513352 HEBP2Q9Y5Z4 205 aa14.62□□□□□ -0.07
NUP54-213ENST00000513352 COL5A1P20908 1838 aaPredicted RBP14.62□□□□□ -0.07
NUP54-213ENST00000513352 UQCRHLA0A096LP55 91 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 TRIM49D1C9J1S8 452 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 UQCRHP07919 91 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 SNRPAP09012 282 aaKnown RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 CBSLP0DN79 551 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 ENO3P13929 434 aaPredicted RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 CNTFP26441 200 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 GCAP28676 217 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 ATP5DP30049 168 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 CBSP35520 551 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 SLC19A1P41440 591 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 SERPINB8P50452 374 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 IL2P60568 153 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 RAB10P61026 200 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 DNAJC3Q13217 504 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 RSPO4Q2I0M5 234 aaPredicted RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 TAF1BQ53T94 588 aaPredicted RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 CAPRIN2Q6IMN6 1127 aaKnown RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 EFL1Q7Z2Z2 1120 aaKnown RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 PIWIL4Q7Z3Z4 852 aaKnown RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 PIP4P1Q86T03 277 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 ZNF761Q86XN6 746 aaPredicted RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 AVL9Q8NBF6 648 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 EEF1AKMT1Q8WVE0 214 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 ZMYND15Q9H091 742 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 SYNDIG1Q9H7V2 258 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 SNX15Q9NRS6 342 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 POT1Q9NUX5 634 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 ZNF624Q9P2J8 865 aaPredicted RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 LRIT1Q9P2V4 623 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 CTNNAL1Q9UBT7 734 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 TDRKHQ9Y2W6 561 aaKnown RBP14.61□□□□□ -0.07
NUP54-213ENST00000513352 RNF215Q9Y6U7 377 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 COLEC10Q9Y6Z7 277 aa14.61□□□□□ -0.07
NUP54-213ENST00000513352 PRAMEF33A0A0G2JMD5 474 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 IQANK1A0A1B0GTG1 560 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 RASGRF2O14827 1237 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 SLC30A4O14863 429 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 RPN2P04844 631 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 NUDT17P0C025 328 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 CKMT1AP12532 417 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 ZNF37AP17032 561 aaPredicted RBP14.6□□□□□ -0.07
NUP54-213ENST00000513352 CKMT2P17540 419 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 XRCC1P18887 633 aaPredicted RBP14.6□□□□□ -0.07
NUP54-213ENST00000513352 CD9P21926 228 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 CRABP2P29373 138 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 TYK2P29597 1187 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 MAPK9P45984 424 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 BDKRB1P46663 353 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 UBE2IP63279 158 aaKnown RBP14.6□□□□□ -0.07
NUP54-213ENST00000513352 PRKG2Q13237 762 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 GBX1Q14549 363 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 PLCL1Q15111 1095 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 LRRC8EQ6NSJ5 796 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 ADGRD1Q6QNK2 874 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 NKAPQ8N5F7 415 aaKnown RBP14.6□□□□□ -0.07
NUP54-213ENST00000513352 Q8N9G6 341 aaPredicted RBP14.6□□□□□ -0.07
NUP54-213ENST00000513352 OR5AR1Q8NGP9 310 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 IFI44Q8TCB0 444 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 JPH3Q8WXH2 748 aaPredicted RBP14.6□□□□□ -0.07
NUP54-213ENST00000513352 NAT6Q93015 286 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 CCDC74AQ96AQ1 378 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 DHRS4Q9BTZ2 278 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 TRIT1Q9H3H1 467 aaKnown RBP14.6□□□□□ -0.07
NUP54-213ENST00000513352 PPCSQ9HAB8 311 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 POPDC3Q9HBV1 291 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 SYTL2Q9HCH5 934 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 FETUBQ9UGM5 382 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 TLK1Q9UKI8 766 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 NFS1Q9Y697 457 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 ANKRD12Q6UB98 2062 aa14.6□□□□□ -0.07
NUP54-213ENST00000513352 RP1P56715 2156 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 LY6G6EA0A0G2JKS1 128 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 PABPN1LA6NDY0 278 aaKnown RBP14.59□□□□□ -0.07
NUP54-213ENST00000513352 TNFSF14O43557 240 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 CBFA2T3O75081 653 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 MPC1LP0DKB6 136 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 GLB1P16278 677 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 ACADLP28330 430 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 NDUFS1P28331 727 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 TRIP6Q15654 476 aaKnown RBP14.59□□□□□ -0.07
NUP54-213ENST00000513352 BEND6Q5SZJ8 279 aaPredicted RBP14.59□□□□□ -0.07
NUP54-213ENST00000513352 TTC23LQ6PF05 361 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 UNC5DQ6UXZ4 953 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 NEK10Q6ZWH5 1172 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 TBC1D1Q86TI0 1168 aaPredicted RBP14.59□□□□□ -0.07
NUP54-213ENST00000513352 OR6C4Q8NGE1 309 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 SH3KBP1Q96B97 665 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 ZBTB9Q96C00 473 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 MTBPQ96DY7 904 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 SLC38A3Q99624 504 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms