RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 OR1A2Q9Y585 309 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 PLK4O00444 970 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 SIGLEC6O43699 453 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 DPM1O60762 260 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 MTHFD2P13995 350 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 KDELR1P24390 212 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CDC25BP30305 580 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC6A9P48067 706 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC1A5Q15758 541 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CNGA3Q16281 694 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 NPNTQ6UXI9 565 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CLNKQ7Z7G1 428 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 EPHA6Q9UF33 1036 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 LCHNA4D1U4 455 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CNMDO75829 334 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 LTA4HP09960 611 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PABPC4LP0CB38 370 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF823P16415 610 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 LBPP18428 481 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 COILP38432 576 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 P2RY2P41231 377 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 STK19P49842 368 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ITGA1P56199 1179 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PPP3CAQ08209 521 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 MRPL28Q13084 256 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 RSPO4Q2I0M5 234 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 SOWAHAQ2M3V2 549 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ZACNQ401N2 412 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PRAMEF13Q5VWM6 474 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF585AQ6P3V2 769 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 NEK10Q6ZWH5 1172 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 LYSMD3Q7Z3D4 306 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 TRIM74Q86UV6 250 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 GSTCDQ8NEC7 633 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PIF1Q9H611 641 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 RUVBL1Q9Y265 456 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 YJEFN3A6XGL0 299 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 AIM2O14862 343 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PRODHO43272 600 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PDE9AO76083 593 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CCDC166P0CW27 439 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 BMP1P13497 986 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 TCN1P20061 433 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CCND1P24385 295 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 GP5P40197 560 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 C2orf80Q0P641 193 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ANXA8L1Q5VT79 327 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 C1orf146Q5VVC0 180 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 FBXL22Q6P050 247 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 RGS9BPQ6ZS82 235 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC41A1Q8IVJ1 513 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC13A3Q8WWT9 602 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PWWP2AQ96N64 755 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 TUBGCP5Q96RT8 1024 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF670Q9BS34 389 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 Q9N2J8 555 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 NDRG3Q9UGV2 375 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CAB39Q9Y376 341 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 TMEM184BQ9Y519 407 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 RTCAO00442 366 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ZBTB22O15209 634 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 GSC2O15499 205 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CLOCKO15516 846 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CYP11A1P05108 521 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ZSCAN26Q16670 478 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 BMT2Q1RMZ1 405 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 C14orf28Q4W4Y0 310 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CLEC20AQ6ZU45 233 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PNPLA1Q8N8W4 532 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 SETD6Q8TBK2 473 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 NANOS1Q8WY41 292 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 SYN2Q92777 582 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ZC3HAV1LQ96H79 300 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 TRPS1Q9UHF7 1281 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PLAGL1Q9UM63 463 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 RGPD1P0DJD0 1748 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CSO75390 466 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 C8GP07360 202 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 RETP07949 1114 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ATP5F1P24539 256 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 CD27P26842 260 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 KRR1Q13601 381 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 LRRC66Q68CR7 880 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 C1orf94Q6P1W5 598 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 WDR77Q9BQA1 342 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PREBQ9HCU5 417 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 PAK6Q9NQU5 681 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF71Q9NQZ8 489 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 KBTBD4Q9NVX7 518 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 DMGDHQ9UI17 866 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 POFUT2Q9Y2G5 429 aa9.04□□□□□ -0.96
LIMCH1-202ENST00000381753 A6NLC8 198 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 SCRG1O75711 98 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 GLSO94925 669 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 APOA1P02647 267 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ALOX5P09917 674 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 CTHP32929 405 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 SUOXP51687 545 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 EEF1A2Q05639 463 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 BNIP1Q12981 228 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms