RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 DHX9Q08211 1270 aaKnown RBP12.69□□□□□ -0.38
CLK3-224ENST00000568605 CYP4F3Q08477 520 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 CRYMQ14894 314 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 ST3GAL2Q16842 350 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 BBS9Q3SYG4 887 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 SPANXN3Q5MJ09 141 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 NKAIN2Q5VXU1 208 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 CAPRIN2Q6IMN6 1127 aaKnown RBP12.69□□□□□ -0.38
CLK3-224ENST00000568605 NEPROQ6NW34 567 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 C8orf74Q6P047 294 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 FOXR1Q6PIV2 292 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 LDB1Q86U70 411 aaPredicted RBP12.69□□□□□ -0.38
CLK3-224ENST00000568605 PROSER1Q86XN7 944 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 CILP2Q8IUL8 1156 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 FBXO39Q8N4B4 442 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 MNS1Q8NEH6 495 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 NCSTNQ92542 709 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 ZNF578Q96N58 590 aaPredicted RBP12.69□□□□□ -0.38
CLK3-224ENST00000568605 INSM2Q96T92 566 aaPredicted RBP12.69□□□□□ -0.38
CLK3-224ENST00000568605 OR52A5Q9H2C5 316 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 KIR3DX1Q9H7L2 352 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 MVB12BQ9H7P6 319 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 C20orf96Q9NUD7 363 aaPredicted RBP12.69□□□□□ -0.38
CLK3-224ENST00000568605 LOXL2Q9Y4K0 774 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 MRFAP1Q9Y605 127 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 CFAP20Q9Y6A4 193 aaKnown RBP12.69□□□□□ -0.38
CLK3-224ENST00000568605 FRYQ5TBA9 3013 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 IGHV5-10-1A0A0J9YXX1 117 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 GOLGA8KD6RF30 607 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 E5RI56 91 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 GOLGA8TH3BQL2 631 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 MATN2O00339 956 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 CASC3O15234 703 aaKnown RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 RAD51CO43502 376 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 ITGA2BP08514 1039 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 RPL21P46778 160 aaKnown RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 PREPP48147 710 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 ARCN1P48444 511 aaKnown RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 ADARP55265 1226 aaKnown RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 ERVPABLB-1P60509 514 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 PRKAA1Q13131 559 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 TBC1D25Q3MII6 688 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 ARMC6Q6NXE6 501 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 DUS1LQ6P1R4 473 aaKnown RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 MICALCLQ6ZW33 695 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 OTOAQ7RTW8 1153 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 KCNMB4Q86W47 210 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 OOSP2Q86WS3 158 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 LILRA3Q8N6C8 439 aaPredicted RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 AGBL5Q8NDL9 886 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 ACVR1CQ8NER5 493 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 SPDYE1Q8NFV5 336 aaPredicted RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 KIF18AQ8NI77 898 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 LPGAT1Q92604 370 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 TFGQ92734 400 aaPredicted RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 EBNA1BP2Q99848 306 aaKnown RBP12.68□□□□□ -0.38
CLK3-224ENST00000568605 ERP44Q9BS26 406 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 P2RY12Q9H244 342 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 SEMA6CQ9H3T2 930 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 WHRNQ9P202 907 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 COMMD10Q9Y6G5 202 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 FAM169AQ9Y6X4 670 aa12.68□□□□□ -0.38
CLK3-224ENST00000568605 ZCWPW2A0A1B0GU75 182 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 TOX3O15405 576 aaPredicted RBP12.67□□□□□ -0.38
CLK3-224ENST00000568605 ANKRD34CP0C6C1 535 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 TYRP1P17643 537 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 ITGB6P18564 788 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 PCBP4P57723 403 aaKnown RBP12.67□□□□□ -0.38
CLK3-224ENST00000568605 CAV1Q03135 178 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 HSPA14Q0VDF9 509 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 ZNF658BQ4V348 819 aaPredicted RBP12.67□□□□□ -0.38
CLK3-224ENST00000568605 SNAP47Q5SQN1 464 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 TMEM164Q5U3C3 297 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 CYB5D1Q6P9G0 228 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 CENPUQ71F23 418 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 TMPRSS9Q7Z410 1059 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 SLC22A15Q8IZD6 547 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 RSC1A1Q92681 617 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 ZDHHC12Q96GR4 267 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 FCRL3Q96P31 734 aaPredicted RBP12.67□□□□□ -0.38
CLK3-224ENST00000568605 FERD3LQ96RJ6 166 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 CD180Q99467 661 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 TRIM56Q9BRZ2 755 aaKnown RBP12.67□□□□□ -0.38
CLK3-224ENST00000568605 RAB33BQ9H082 229 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 DPH5Q9H2P9 285 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 TRIT1Q9H3H1 467 aaKnown RBP12.67□□□□□ -0.38
CLK3-224ENST00000568605 PISDQ9UG56 409 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 ZC3H7BQ9UGR2 993 aaKnown RBP12.67□□□□□ -0.38
CLK3-224ENST00000568605 SLC24A2Q9UI40 661 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 CHMP2BQ9UQN3 213 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 ASF1AQ9Y294 204 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 SNX24Q9Y343 169 aa12.67□□□□□ -0.38
CLK3-224ENST00000568605 URB1O60287 2271 aaKnown RBP12.67□□□□□ -0.38
CLK3-224ENST00000568605 SLC5A10A0PJK1 596 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 OR5K3A6NET4 321 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 BANF1O75531 89 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 RASSF9O75901 435 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 TNFSF15O95150 251 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 C9P02748 559 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 HOXB3P14651 431 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms