RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 FAM114A1Q8IWE2 563 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 ATAD1Q8NBU5 361 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 OCC1Q8TAD7 63 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 TANKQ92844 425 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 SEMA4DQ92854 862 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 SCMH1Q96GD3 660 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 HES6Q96HZ4 224 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 FAM84BQ96KN1 310 aaPredicted RBP7.09□□□□□ -1.27
NUP54-215ENST00000514313 OR1F2PQ96R84 312 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 FEVQ99581 238 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 LRMDAQ9H2I8 198 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 MIOSQ9NXC5 875 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 STK26Q9P289 416 aa7.09□□□□□ -1.27
NUP54-215ENST00000514313 CPSF3Q9UKF6 684 aaKnown RBP7.09□□□□□ -1.27
NUP54-215ENST00000514313 ABT1Q9ULW3 272 aaKnown RBP7.09□□□□□ -1.27
NUP54-215ENST00000514313 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.09□□□□□ -1.27
NUP54-215ENST00000514313 TAF1P21675 1872 aa7.09□□□□□ -1.28
NUP54-215ENST00000514313 CKAP5Q14008 2032 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 PDS5AQ29RF7 1337 aaKnown RBP7.08□□□□□ -1.28
NUP54-215ENST00000514313 DVL1O14640 695 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 TCF4P15884 667 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 CD22P20273 847 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 HNF4AP41235 474 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 PCYT1AP49585 367 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 TPD52P55327 224 aaPredicted RBP7.08□□□□□ -1.28
NUP54-215ENST00000514313 POLR2LP62875 67 aaKnown RBP7.08□□□□□ -1.28
NUP54-215ENST00000514313 ODF2Q5BJF6 829 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 SFMBT2Q5VUG0 894 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 HOOK3Q86VS8 718 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 TMPRSS12Q86WS5 348 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 ODF3L1Q8IXM7 274 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 SYCP3Q8IZU3 236 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 GBGT1Q8N5D6 347 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 FAM216AQ8WUB2 273 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 ABTB1Q969K4 478 aaPredicted RBP7.08□□□□□ -1.28
NUP54-215ENST00000514313 EXOC4Q96A65 974 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 PHF21AQ96BD5 680 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 MTERF3Q96E29 417 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 INPP5KQ9BT40 448 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 LMF2Q9BU23 707 aaKnown RBP7.08□□□□□ -1.28
NUP54-215ENST00000514313 SF3B5Q9BWJ5 86 aaKnown RBP7.08□□□□□ -1.28
NUP54-215ENST00000514313 TRPV4Q9HBA0 871 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 HIF1ANQ9NWT6 349 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.08□□□□□ -1.28
NUP54-215ENST00000514313 ARMCX3Q9UH62 379 aaPredicted RBP7.08□□□□□ -1.28
NUP54-215ENST00000514313 MYO6Q9UM54 1294 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 SNX7Q9UNH6 387 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 LIPT1Q9Y234 373 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 NME7Q9Y5B8 376 aa7.08□□□□□ -1.28
NUP54-215ENST00000514313 BMP10O95393 424 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 BAG2O95816 211 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 LINC00271P0C7V0 271 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 GNAZP19086 355 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 POLR2CP19387 275 aaPredicted RBP7.07□□□□□ -1.28
NUP54-215ENST00000514313 HOXA11P31270 313 aaPredicted RBP7.07□□□□□ -1.28
NUP54-215ENST00000514313 SLC9A3P48764 834 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 ASCL1P50553 236 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 PLCD1P51178 756 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 MAPK12P53778 367 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 PRKCZQ05513 592 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 DSC1Q08554 894 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 C17orf67Q0P5P2 114 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 CALCRLQ16602 461 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 ANKRD20A4Q4UJ75 823 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 ANKRD20A8PQ5CZ79 823 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 ANKRD20A2Q5SQ80 823 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 GRTP1Q5TC63 336 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 ANKRD20A1Q5TYW2 823 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 ANKRD20A3Q5VUR7 823 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 SHEQ5VZ18 495 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 PLBD1Q6P4A8 553 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 DGLUCYQ7Z3D6 616 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 TMPRSS11BQ86T26 416 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 OR5M8Q8NGP6 311 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 MGARPQ8TDB4 240 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 SLC20A1Q8WUM9 679 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 MOB3AQ96BX8 217 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 Q9N2K0 584 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 SIX4Q9UIU6 781 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 KCNS2Q9ULS6 477 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 OR2W1Q9Y3N9 320 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 YIPF1Q9Y548 306 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 PCDHAC2Q9Y5I4 1007 aa7.07□□□□□ -1.28
NUP54-215ENST00000514313 AP5Z1O43299 807 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 GPR137BO60478 399 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 PTPN3P26045 913 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 ARRB2P32121 409 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 UBASH3AP57075 661 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 PRKAA1Q13131 559 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 MYBPHQ13203 477 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 ZNF234Q14588 700 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 FAM122CQ6P4D5 195 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 RHBDF2Q6PJF5 856 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 ZNF704Q6ZNC4 412 aaPredicted RBP7.06□□□□□ -1.28
NUP54-215ENST00000514313 UNC45BQ8IWX7 931 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 DNAJC10Q8IXB1 793 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 TUSC5Q8IXB3 177 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 KLHL7Q8IXQ5 586 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 TIGD4Q8IY51 512 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 RNF113BQ8IZP6 322 aaKnown RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms