RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ENTPD4Q9Y227 616 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 HEBP2Q9Y5Z4 205 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 MED13Q9UHV7 2174 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 TMEM150CB9EJG8 249 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 MSL3P1P0C860 447 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 HMGCLP35914 325 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 GLRBP48167 497 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 AP1B1Q10567 949 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 ZBTB17Q13105 803 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 ITGA9Q13797 1035 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 SSPNQ14714 243 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 METRNLQ641Q3 311 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 HGSNATQ68CP4 663 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 TMEM220Q6QAJ8 160 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 FAM198BQ6UWH4 519 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 GPR135Q8IZ08 494 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 GALNT16Q8N428 558 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 CNTD1Q8N815 330 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.47■□□□□ 0.23
VPS29-204ENST00000548259 LRRN4Q8WUT4 740 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 UBE2Q2Q8WVN8 375 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 N4BP2L2Q92802 583 aaPredicted RBP16.47■□□□□ 0.23
VPS29-204ENST00000548259 AGAP3Q96P47 875 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 BPIFA1Q9NP55 256 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 PCMTD2Q9NV79 361 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 SLC24A2Q9UI40 661 aa16.47■□□□□ 0.23
VPS29-204ENST00000548259 SLC9B1P1A6NJY1 282 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 E7EQ34 232 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 PPP1R12AO14974 1030 aaPredicted RBP16.46■□□□□ 0.23
VPS29-204ENST00000548259 SKILP12757 684 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 PBLDP30039 288 aaPredicted RBP16.46■□□□□ 0.23
VPS29-204ENST00000548259 AKT1P31749 480 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 SPAM1P38567 509 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 KPNA2P52292 529 aaKnown RBP16.46■□□□□ 0.23
VPS29-204ENST00000548259 NFE2L1Q14494 772 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 PDK1Q15118 436 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 LCN10Q6JVE6 187 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 MRGPREQ86SM8 312 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 RASGEF1AQ8N9B8 481 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 ST6GALNAC3Q8NDV1 305 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 DDHD1Q8NEL9 900 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 COG1Q8WTW3 980 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 FAF2Q96CS3 445 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 MAK16Q9BXY0 300 aaKnown RBP16.46■□□□□ 0.23
VPS29-204ENST00000548259 NAT10Q9H0A0 1025 aaKnown RBP16.46■□□□□ 0.23
VPS29-204ENST00000548259 RTN4Q9NQC3 1192 aaKnown RBP16.46■□□□□ 0.23
VPS29-204ENST00000548259 HACD3Q9P035 362 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 POMT2Q9UKY4 750 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 TMPRSS11EQ9UL52 423 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 PKP3Q9Y446 797 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 HEY1Q9Y5J3 304 aa16.46■□□□□ 0.23
VPS29-204ENST00000548259 CFAP20Q9Y6A4 193 aaKnown RBP16.46■□□□□ 0.23
VPS29-204ENST00000548259 GSAPA4D1B5 854 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 MGAT4DA6NG13 374 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 OR2AG2A6NM03 316 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 CYP1A2P05177 515 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 POLR2CP19387 275 aaPredicted RBP16.45■□□□□ 0.22
VPS29-204ENST00000548259 MSH3P20585 1137 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 FOLR3P41439 243 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 SLC10A2Q12908 348 aaPredicted RBP16.45■□□□□ 0.22
VPS29-204ENST00000548259 ABRQ12979 859 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 PTCHD3Q3KNS1 767 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 ATP13A4Q4VNC1 1196 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 DCAF10Q5QP82 559 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 PRAMEF17Q5VTA0 474 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 HOOK3Q86VS8 718 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 PQLC3Q8N755 202 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 INSM2Q96T92 566 aaPredicted RBP16.45■□□□□ 0.22
VPS29-204ENST00000548259 WWP1Q9H0M0 922 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 IL26Q9NPH9 171 aa16.45■□□□□ 0.22
VPS29-204ENST00000548259 GLYATL1P3A0A0U1RQE8 302 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 ARHGAP10A1A4S6 786 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 HEATR9A2RTY3 570 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 LDB2O43679 373 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 PMPCBO75439 489 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 CAPN1P07384 714 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 ZFXP17010 805 aaPredicted RBP16.44■□□□□ 0.22
VPS29-204ENST00000548259 ARCN1P48444 511 aaKnown RBP16.44■□□□□ 0.22
VPS29-204ENST00000548259 FNBP1LQ5T0N5 605 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 GPRC6AQ5T6X5 926 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 FAM69BQ5VUD6 431 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 IRAK1BP1Q5VVH5 260 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 MLIPQ5VWP3 458 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 E4F1Q66K89 784 aaPredicted RBP16.44■□□□□ 0.22
VPS29-204ENST00000548259 FAM151BQ6UXP7 276 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 FAM83HQ6ZRV2 1179 aaPredicted RBP16.44■□□□□ 0.22
VPS29-204ENST00000548259 RBM43Q6ZSC3 357 aaKnown RBP16.44■□□□□ 0.22
VPS29-204ENST00000548259 OR4E2Q8NGC2 313 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 OR1L3Q8NH93 324 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 LCN9Q8WX39 176 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 RNF157Q96PX1 679 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 RANBP9Q96S59 729 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 CCM2Q9BSQ5 444 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 CEP41Q9BYV8 373 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 SRMSQ9H3Y6 488 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 NDOR1Q9UHB4 597 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 AP1M2Q9Y6Q5 423 aa16.44■□□□□ 0.22
VPS29-204ENST00000548259 A0A0A6YYK5 440 aaPredicted RBP16.43■□□□□ 0.22
VPS29-204ENST00000548259 LRRTM2O43300 516 aa16.43■□□□□ 0.22
VPS29-204ENST00000548259 LCA5LO95447 670 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms