RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 DCUN1D1Q96GG9 259 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 SLC45A3Q96JT2 553 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 LINC00615Q96LM1 132 aaPredicted RBP18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 CATSPER2Q96P56 530 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 CTRCQ99895 268 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 APOL2Q9BQE5 337 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 SEMA5BQ9P283 1151 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 FKBPLQ9UIM3 349 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 ZNF891A8MT65 544 aaPredicted RBP18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 CFAP99D6REC4 459 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 GPR39O43194 453 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 RASSF9O75901 435 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 ITGALP20701 1170 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 CA5AP35218 305 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 ZNF140P52738 457 aaPredicted RBP18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 KLF1Q13351 362 aaPredicted RBP18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 NFE2L1Q14494 772 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 PTPRCAPQ14761 206 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 P3H1Q32P28 736 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 CACHD1Q5VU97 1274 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 DENND5AQ6IQ26 1287 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 SNX20Q7Z614 316 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 GAS2L3Q86XJ1 694 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 ESX1Q8N693 406 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 EXD3Q8N9H8 876 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 UBXN4Q92575 508 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 RSC1A1Q92681 617 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 FAM118BQ9BPY3 351 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 LRRC40Q9H9A6 602 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 GPN2Q9H9Y4 310 aaPredicted RBP18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 APMAPQ9HDC9 416 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 CRLS1Q9UJA2 301 aa18.67■□□□□ 0.58
CCDC28A-203ENST00000617445 GOLGA6L6A8MZA4 724 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 DLGAP3O95886 979 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 MTHFD1P11586 935 aaKnown RBP18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 LEPRP48357 1165 aaKnown RBP18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 MC1RQ01726 317 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 FOXM1Q08050 763 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 KCTD11Q693B1 232 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 IRGCQ6NXR0 463 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 FAM83HQ6ZRV2 1179 aaPredicted RBP18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 HES6Q96HZ4 224 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 CD180Q99467 661 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 COPS8Q99627 209 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 CCM2Q9BSQ5 444 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 ADNPQ9H2P0 1102 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 PSMD13Q9UNM6 376 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 KCTD3Q9Y597 815 aa18.66■□□□□ 0.58
CCDC28A-203ENST00000617445 C17orf113A0A1B0GUU1 675 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 H7C0S8 307 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 DDX3YO15523 660 aaKnown RBP18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 LDB2O43679 373 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 NELFEP18615 380 aaKnown RBP18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 NDUFS1P28331 727 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 STIP1P31948 543 aaKnown RBP18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 SEPHS1P49903 392 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 OLIG2Q13516 323 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 PLCL1Q15111 1095 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 CRTC2Q53ET0 693 aaPredicted RBP18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 BORAQ6PGQ7 559 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 DET1Q7L5Y6 550 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 TIPARPQ7Z3E1 657 aaKnown RBP18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 BPHLQ86WA6 291 aaPredicted RBP18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 KMT5CQ86Y97 462 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 NXPE1Q8N323 547 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 FAM71DQ8N9W8 422 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 OR13C4Q8NGS5 318 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 SLC35B2Q8TB61 432 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 FCRL4Q96PJ5 515 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 FRMD8P1Q9BZ68 369 aaPredicted RBP18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 ULBP3Q9BZM4 244 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 IMP3Q9NV31 184 aaKnown RBP18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 HEBP2Q9Y5Z4 205 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 COLEC10Q9Y6Z7 277 aa18.65■□□□□ 0.58
CCDC28A-203ENST00000617445 PIKFYVEQ9Y2I7 2098 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 J3QKU1 62 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 FTCDO95954 541 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 GSTM1P09488 218 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 SLC35G4P0C7Q5 338 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 FGF5P12034 268 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 ATP1B2P14415 290 aaPredicted RBP18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 PBLDP30039 288 aaPredicted RBP18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 PRLHRP49683 370 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 CYP4F2P78329 520 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 GSTM4Q03013 218 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 SPARCL1Q14515 664 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 LINC00523Q86TU6 105 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 CARFQ8N187 725 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 GPR150Q8NGU9 434 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 HM13Q8TCT9 377 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 OR6C1Q96RD1 312 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 INSM2Q96T92 566 aaPredicted RBP18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 TSGA10Q9BZW7 698 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 WWP1Q9H0M0 922 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 VPS37BQ9H9H4 285 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 PDE7BQ9NP56 450 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 STARD5Q9NSY2 213 aa18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 GEMIN8Q9NWZ8 242 aaKnown RBP18.64■□□□□ 0.57
CCDC28A-203ENST00000617445 PACSIN2Q9UNF0 486 aaPredicted RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms