RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 LIN37Q96GY3 246 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-212ENST00000596163 KRT12Q99456 494 aa16.94■□□□□ 0.3
SHKBP1-212ENST00000596163 ATXN7L1Q9ULK2 861 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-212ENST00000596163 PCDHB1Q9Y5F3 818 aa16.94■□□□□ 0.3
SHKBP1-212ENST00000596163 HEBP2Q9Y5Z4 205 aa16.94■□□□□ 0.3
SHKBP1-212ENST00000596163 CCDC187A0A096LP49 1063 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 NDUFS3O75489 264 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 VAPBO95292 243 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 POLBP06746 335 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 LSSP48449 732 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 CYP4F3Q08477 520 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 TRA2AQ13595 282 aaKnown RBP eCLIP16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 CLCA4Q14CN2 919 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 MORF4L2Q15014 288 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 RPE65Q16518 533 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 SPATA4Q8NEY3 305 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 OR4D9Q8NGE8 314 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 ZFPM2Q8WW38 1151 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 ZCCHC14Q8WYQ9 949 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 MFSD3Q96ES6 412 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 TCF12Q99081 682 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 WWP1Q9H0M0 922 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 POLR1BQ9H9Y6 1135 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 EPB41L5Q9HCM4 733 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 FAM8A1Q9UBU6 413 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 PSMD13Q9UNM6 376 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 WDR37Q9Y2I8 494 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 MAD1L1Q9Y6D9 718 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 COLEC10Q9Y6Z7 277 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 KNTC1P50748 2209 aa16.93■□□□□ 0.3
SHKBP1-212ENST00000596163 FAM187AA6NFU0 413 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 OR52A4PA6NMU1 304 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 KIF2AO00139 706 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 IFRD1O00458 451 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 LIN7AO14910 233 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 TTI1O43156 1089 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 AMD1P17707 334 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 NDUFS1P28331 727 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 RBMS1P29558 406 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 MAGEA3P43357 314 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 CD151P48509 253 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 CKAP4Q07065 602 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 ZFP36L1Q07352 338 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 THOC5Q13769 683 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 KRT33BQ14525 404 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 PHF19Q5T6S3 580 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 RNF187Q5TA31 235 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 NKAIN2Q5VXU1 208 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 TMEM71Q6P5X7 295 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 WDR74Q6RFH5 385 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 CES3Q6UWW8 571 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 LRRC6Q86X45 466 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 ZNF761Q86XN6 746 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 BBOF1Q8ND07 529 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 GABPB2Q8TAK5 448 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 NAT14Q8WUY8 206 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 ELMO1Q92556 727 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 CCDC97Q96F63 343 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 SNF8Q96H20 258 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 C16orf45Q96MC5 204 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 C12orf66Q96MD2 445 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 NAT9Q9BTE0 207 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 COG4Q9H9E3 785 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 RDH14Q9HBH5 336 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 SLC40A1Q9NP59 571 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 IMP3Q9NV31 184 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 VPS9D1Q9Y2B5 631 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 PCDHGA8Q9Y5G5 932 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 RPS6KL1Q9Y6S9 549 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 ASXL3Q9C0F0 2248 aa16.92■□□□□ 0.3
SHKBP1-212ENST00000596163 PTPRBP23467 1997 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 CEP295Q9C0D2 2601 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 ZNF106Q9H2Y7 1883 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 EFCAB8A8MWE9 144 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 PRMT5O14744 637 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 USP1O94782 785 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 UBXN7O94888 489 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 MTHFD1P11586 935 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 MLLT3P42568 568 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 MAPK9P45984 424 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 LIMK2P53671 638 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 GABREP78334 506 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 ANKRD20A4Q4UJ75 823 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 KLHL35Q6PF15 583 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 RAB11FIP2Q7L804 512 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 TMEM135Q86UB9 458 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 PLXDC1Q8IUK5 500 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 SLITRK4Q8IW52 837 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 LMNTD2Q8IXW0 634 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 PDIK1LQ8N165 341 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 FBXO39Q8N4B4 442 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 GPR150Q8NGU9 434 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 NCSTNQ92542 709 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 ZNF669Q96BR6 464 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 STAMBPL1Q96FJ0 436 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 SIGLEC10Q96LC7 697 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 INSM2Q96T92 566 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 CMKLR1Q99788 373 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 NUDT22Q9BRQ3 303 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 CARD6Q9BX69 1037 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms