RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 FFAR2O15552 330 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 SGTAO43765 313 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 NARSO43776 548 aaKnown RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 DNAJC8O75937 253 aaPredicted RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 S100BP04271 92 aaPredicted RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 TARSP26639 723 aaKnown RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 GPR1P46091 355 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 COPAP53621 1224 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 CDH13P55290 713 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 GRSF1Q12849 480 aaKnown RBP eCLIP17.84■□□□□ 0.45
VIM-201ENST00000224237 TMEM115Q12893 351 aaPredicted RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 KRT72Q14CN4 511 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 TBCCQ15814 346 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 PDPRQ8NCN5 879 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 PRR11Q96HE9 360 aaPredicted RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 NUF2Q9BZD4 464 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 ZCCHC2Q9C0B9 1178 aaKnown RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 CDYLQ9Y232 598 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 UBFD1O14562 309 aaKnown RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 INPP4BO15327 924 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 NUAK1O60285 661 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 HNRNPCL1O60812 293 aaKnown RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 CLCQ05315 142 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 HSPA14Q0VDF9 509 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 LCP2Q13094 533 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 PDCD2Q16342 344 aaPredicted RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 METTL21CQ5VZV1 264 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 KIAA1211LQ6NV74 962 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 ACAD11Q709F0 780 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 HDDC3Q8N4P3 179 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 IL17RCQ8NAC3 791 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 ELMO1Q92556 727 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 RDH14Q9HBH5 336 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 ARMCX1Q9P291 453 aa17.84■□□□□ 0.45
VIM-201ENST00000224237 TNPO3Q9Y5L0 923 aaKnown RBP17.84■□□□□ 0.45
VIM-201ENST00000224237 A0A1W2PP55 124 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 LRRC14BA6NHZ5 514 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 OR2AG2A6NM03 316 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 TMEM233B4DJY2 109 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 CBX6O95503 412 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 VCLP18206 1134 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 PRLHRP49683 370 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 RASSF2P50749 326 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 RPS14P62263 151 aaKnown RBP17.83■□□□□ 0.44
VIM-201ENST00000224237 BOP1Q14137 746 aaKnown RBP17.83■□□□□ 0.44
VIM-201ENST00000224237 ZNF648Q5T619 568 aaPredicted RBP17.83■□□□□ 0.44
VIM-201ENST00000224237 RASGEF1AQ8N9B8 481 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 ASZ1Q8WWH4 475 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 PHF7Q9BWX1 381 aaPredicted RBP17.83■□□□□ 0.44
VIM-201ENST00000224237 EPHX3Q9H6B9 360 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 PCTPQ9UKL6 214 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 ADAMTS6Q9UKP5 1117 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 CNOT6Q9ULM6 557 aaKnown RBP17.83■□□□□ 0.44
VIM-201ENST00000224237 TRIM33Q9UPN9 1127 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 TRAF6Q9Y4K3 522 aa17.83■□□□□ 0.44
VIM-201ENST00000224237 ATG13O75143 517 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 TM7SF2O76062 418 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 CDK14O94921 469 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 MPC1LP0DKB6 136 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 T-ENOLP0DO92 83 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 HOXB2P14652 356 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 TSPAN8P19075 237 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 AGTR2P50052 363 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 TAS2R38P59533 333 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 SH3BP2P78314 561 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 TTC31Q49AM3 519 aaPredicted RBP17.82■□□□□ 0.44
VIM-201ENST00000224237 PELI3Q8N2H9 469 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 TRPC4APQ8TEL6 797 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 ZNF483Q8TF39 744 aaPredicted RBP17.82■□□□□ 0.44
VIM-201ENST00000224237 NSUN5Q96P11 429 aaKnown RBP17.82■□□□□ 0.44
VIM-201ENST00000224237 CCDC106Q9BWC9 280 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 MKRN2Q9H000 416 aaKnown RBP17.82■□□□□ 0.44
VIM-201ENST00000224237 MID1IP1Q9NPA3 183 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 FIS1Q9Y3D6 152 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 TRIOO75962 3097 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 CAPN14A8MX76 684 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 K7ESM1 405 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 ADAM23O75077 832 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 RNASEH2AO75792 299 aaKnown RBP17.82■□□□□ 0.44
VIM-201ENST00000224237 PCDH8O95206 1070 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 MLYCDO95822 493 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 C8GP07360 202 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 FGF4P08620 206 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 CALB2P22676 271 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 MRPS21P82921 87 aaKnown RBP17.82■□□□□ 0.44
VIM-201ENST00000224237 PCBP2Q15366 365 aaKnown RBP eCLIP17.82■□□□□ 0.44
VIM-201ENST00000224237 FBXO48Q5FWF7 155 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 NEK10Q6ZWH5 1172 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 CLYBLQ8N0X4 340 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 BEND7Q8N7W2 519 aaPredicted RBP17.82■□□□□ 0.44
VIM-201ENST00000224237 KLHL29Q96CT2 875 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 MAELQ96JY0 434 aaKnown RBP17.82■□□□□ 0.44
VIM-201ENST00000224237 PPP1R36Q96LQ0 422 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 OR52B2Q96RD2 323 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 CCDC28BQ9BUN5 200 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 TNFRSF12AQ9NP84 129 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 SERGEFQ9UGK8 458 aa17.82■□□□□ 0.44
VIM-201ENST00000224237 E2F3O00716 465 aa17.81■□□□□ 0.44
VIM-201ENST00000224237 KLF8O95600 359 aaPredicted RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 327.4 ms