RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GRID2IPA4D2P6 1211 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 GAPDHSO14556 408 aaPredicted RBP18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 PYGMP11217 842 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 MSH3P20585 1137 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 KIF5AQ12840 1032 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 SRSF6Q13247 344 aaKnown RBP18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 TMEM220Q6QAJ8 160 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 PEX26Q7Z412 305 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 CACNA2D3Q8IZS8 1091 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 BEND7Q8N7W2 519 aaPredicted RBP18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 UBE2Q2Q8WVN8 375 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 ALG3Q92685 438 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 PMEPA1Q969W9 287 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 ZDHHC12Q96GR4 267 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 GORASP1Q9BQQ3 440 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 ARHGAP9Q9BRR9 750 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 SPRY4Q9C004 299 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 C10orf88Q9H8K7 445 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 ARNT2Q9HBZ2 717 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 OGFRQ9NZT2 677 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 IMPACTQ9P2X3 320 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 EPHA6Q9UF33 1036 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 ARL5AQ9Y689 179 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 SLC30A1Q9Y6M5 507 aa18.72■□□□□ 0.59
CCDC28A-203ENST00000617445 ZNF106Q9H2Y7 1883 aaKnown RBP18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 TLN1Q9Y490 2541 aaKnown RBP18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 POLR1CO15160 346 aaPredicted RBP18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 BUD23O43709 281 aaKnown RBP18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 RAD1O60671 282 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 PRAMEF1O95521 474 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 PTMAP06454 111 aaKnown RBP18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 TYRP1P17643 537 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 PSMB4P28070 264 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 HADHAP40939 763 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 DRG2P55039 364 aaKnown RBP18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 CLCA4Q14CN2 919 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 KLHL35Q6PF15 583 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 KLHDC8BQ8IXV7 354 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 NLGN4XQ8N0W4 816 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 ACRBPQ8NEB7 543 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 NLGN4YQ8NFZ3 816 aaPredicted RBP18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 OR4K2Q8NGD2 314 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 HEXDCQ8WVB3 486 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 KLHL3Q9UH77 587 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 ACSL5Q9ULC5 683 aa18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 TMEM184BQ9Y519 407 aaPredicted RBP18.71■□□□□ 0.59
CCDC28A-203ENST00000617445 OR52A4PA6NMU1 304 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 B8ZZF3 427 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 SRP72O76094 671 aaKnown RBP18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 RALBP11234 206 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 AKT1P31749 480 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 CAPZBP47756 277 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 CTSCP53634 463 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 GPR18Q14330 331 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 IL11RAQ14626 422 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 METRNLQ641Q3 311 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 CYB5D1Q6P9G0 228 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 PRSS42Q7Z5A4 293 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 CCDC110Q8TBZ0 833 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 ZFPM2Q8WW38 1151 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 JPH3Q8WXH2 748 aaPredicted RBP18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 KIAA1143Q96AT1 154 aaPredicted RBP18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 ULK4Q96C45 1275 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 SLC12A9Q9BXP2 914 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 SEMA4CQ9C0C4 833 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 ZNF768Q9H5H4 540 aaKnown RBP18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 ASB8Q9H765 288 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 WDR37Q9Y2I8 494 aa18.7■□□□□ 0.58
CCDC28A-203ENST00000617445 MGAT4DA6NG13 374 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 OR2AG2A6NM03 316 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 AGAP14A8MT82 685 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 CDC25BP30305 580 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 GFERP55789 205 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 ABHD18Q0P651 414 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 MSLNQ13421 630 aaPredicted RBP18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 MAP7Q14244 749 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 RPE65Q16518 533 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 PARP6Q2NL67 630 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 LINC00303Q3SY05 128 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 FNBP1LQ5T0N5 605 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 EXTL1Q92935 676 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 TGM7Q96PF1 710 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 TBL1YQ9BQ87 522 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 SIDT1Q9NXL6 827 aaKnown RBP18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 TRIM10Q9UDY6 481 aa18.69■□□□□ 0.58
CCDC28A-203ENST00000617445 PSMD3O43242 534 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 STK17BO94768 372 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 PLA2G2AP14555 144 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 LIFP15018 202 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 WT1P19544 449 aaPredicted RBP18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 XIAPP98170 497 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 TBR1Q16650 682 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 GPR33Q49SQ1 333 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 BCL7AQ4VC05 210 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 AADACL2Q6P093 401 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 ARHGEF18Q6ZSZ5 1173 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 TMEM139Q8IV31 216 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 RNF10Q8N5U6 811 aaKnown RBP18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 OR2L2Q8NH16 312 aa18.68■□□□□ 0.58
CCDC28A-203ENST00000617445 KLHL6Q8WZ60 621 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms