RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C2orf81A6NN90 581 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 STX7O15400 261 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 TOX3O15405 576 aaPredicted RBP18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 ANKRD34CP0C6C1 535 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 RBP3P10745 1247 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 SLC19A1P41440 591 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 VAV2P52735 878 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 EIF3EP60228 445 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 PDE1BQ01064 536 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 OTUD4Q01804 1114 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 CHRNA6Q15825 494 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 KHDC1Q4VXA5 237 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 SNAP47Q5SQN1 464 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 CEACAM20Q6UY09 585 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 RANBP10Q6VN20 620 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 C11orf96Q7Z7L8 435 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 BMPERQ8N8U9 685 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 DDHD1Q8NEL9 900 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 NKD1Q969G9 470 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 MED8Q96G25 268 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 ZNF514Q96K75 400 aaPredicted RBP18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 C19orf43Q9BQ61 176 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 SMOXQ9NWM0 555 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 SCHIP1Q9P0W5 487 aaPredicted RBP18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 ZNF624Q9P2J8 865 aaPredicted RBP18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 DNAJC16Q9Y2G8 782 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 MN1Q10571 1320 aaPredicted RBP18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 SPTA1P02549 2419 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 A8MU76 341 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 UBXN7O94888 489 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 C9P02748 559 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 LPOP22079 712 aaPredicted RBP18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 HALP42357 657 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 MAPK9P45984 424 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 DMPKQ09013 629 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 TAF1AQ15573 450 aaPredicted RBP18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 PLA2G4EQ3MJ16 856 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 ANKRD20A2Q5SQ80 823 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 ANKRD20A1Q5TYW2 823 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 ANKRD20A3Q5VUR7 823 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 DARS2Q6PI48 645 aaKnown RBP18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 FAM151BQ6UXP7 276 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 ZNF605Q86T29 641 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 AMZ2Q86W34 360 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 SYCE1Q8N0S2 351 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 LRRC57Q8N9N7 239 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 TTC13Q8NBP0 860 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 TBC1D10AQ9BXI6 508 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 LACRTQ9GZZ8 138 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 SLC40A1Q9NP59 571 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 FEZ2Q9UHY8 353 aaPredicted RBP18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 REXO2Q9Y3B8 237 aaKnown RBP18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 PCDHGA4Q9Y5G9 962 aa18.75■□□□□ 0.59
CCDC28A-203ENST00000617445 F5H423 210 aaPredicted RBP18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 CAPN5O15484 640 aaPredicted RBP18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 AGTP01019 485 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 AMD1P17707 334 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 ADRA1AP35348 466 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 UGT1A3P35503 534 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 ARSDP51689 593 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 LONRF2Q1L5Z9 754 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 RAD9BQ6WBX8 426 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 KIAA1328Q86T90 577 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 VASH2Q86V25 355 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 IL22RA1Q8N6P7 574 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 UBL4BQ8N7F7 174 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 ZNF398Q8TD17 642 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 CXorf40BQ96DE9 158 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 BAG1Q99933 345 aaPredicted RBP18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 TRIT1Q9H3H1 467 aaKnown RBP18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 AMFRQ9UKV5 643 aa18.74■□□□□ 0.59
CCDC28A-203ENST00000617445 MACROD2A1Z1Q3 448 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 GOLGA6L9A6NEM1 432 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 MIF4GDA9UHW6 222 aaKnown RBP18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 KCNN4O15554 427 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 UGT1A9O60656 530 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 POP7O75817 140 aaKnown RBP18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 CRTAMO95727 393 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 SFTPCP11686 197 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 BRAFP15056 766 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 UGT1A6P19224 532 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 UGT1A1P22309 533 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 UGT1A4P22310 534 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 RPL10P27635 214 aaKnown RBP18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 MAP4P27816 1152 aaKnown RBP18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 LY6DQ14210 128 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 SEPT7Q16181 437 aaKnown RBP18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 GPRC6AQ5T6X5 926 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 ANKS6Q68DC2 871 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 RASGEF1AQ8N9B8 481 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 RTP4Q96DX8 246 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 C9orf72Q96LT7 481 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 SPATA13Q96N96 652 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 EFHD1Q9BUP0 239 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 FICDQ9BVA6 458 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 RAB33BQ9H082 229 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 UGT1A7Q9HAW7 530 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 UGT1A10Q9HAW8 530 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 UGT1A8Q9HAW9 530 aa18.73■□□□□ 0.59
CCDC28A-203ENST00000617445 PILRAQ9UKJ1 303 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms