RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PPARGP37231 505 aaPredicted RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 NPY2RP49146 381 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 SESN2P58004 480 aaPredicted RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 PRAMEP78395 509 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 INSM1Q01101 510 aaPredicted RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 PLA2G4EQ3MJ16 856 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 CCDC38Q502W7 563 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 ZRANB3Q5FWF4 1079 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 ZNF648Q5T619 568 aaPredicted RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 NAGSQ8N159 534 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 CACTIN-AS1Q8N1I8 211 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 TRIM44Q96DX7 344 aaPredicted RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 CDKN2AIPNLQ96HQ2 116 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 COPS8Q99627 209 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 ZMYND15Q9H091 742 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 DDX47Q9H0S4 455 aaKnown RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A7Q9HAW7 530 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A10Q9HAW8 530 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A8Q9HAW9 530 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 XAB2Q9HCS7 855 aaKnown RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 KLC4Q9NSK0 619 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 SPATS2LQ9NUQ6 558 aaKnown RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 ASIC3Q9UHC3 531 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 DNMT3AQ9Y6K1 912 aaPredicted RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 CHD8Q9HCK8 2581 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 KIR2DS5A0A0G2JLQ3 304 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 A0A0G2JNG1 304 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 OR2AG2A6NM03 316 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 PDZK1P1A8MUH7 402 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 KIR2DS3K7RE56 304 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 QSOX1O00391 747 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 CCL22O00626 93 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 SNX2O60749 519 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 TOP3BO95985 862 aaKnown RBP12.8□□□□□ -0.36
CLK3-224ENST00000568605 SPINK2P20155 84 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 IDSP22304 550 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 ACRV1P26436 265 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 CASQ1P31415 396 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 GRIA1P42261 906 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 HALP42357 657 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 MAGEA6P43360 314 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 FASLGP48023 281 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 ETF1P62495 437 aaKnown RBP12.8□□□□□ -0.36
CLK3-224ENST00000568605 XIAPP98170 497 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 KCNJ11Q14654 390 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 KIR2DS5Q14953 304 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 KHDC1Q4VXA5 237 aaKnown RBP12.8□□□□□ -0.36
CLK3-224ENST00000568605 AARS2Q5JTZ9 985 aaKnown RBP12.8□□□□□ -0.36
CLK3-224ENST00000568605 PCID2Q5JVF3 399 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 PERM1Q5SV97 790 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 TSTD2Q5T7W7 516 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 LRRC8BQ6P9F7 803 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 RBM44Q6ZP01 1051 aaKnown RBP12.8□□□□□ -0.36
CLK3-224ENST00000568605 SYDE1Q6ZW31 735 aaPredicted RBP12.8□□□□□ -0.36
CLK3-224ENST00000568605 TAS2R42Q7RTR8 314 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 AMZ2Q86W34 360 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 CCNJLQ8IV13 435 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 SLCO2A1Q92959 643 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 GRAMD1AQ96CP6 724 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 NXPE2Q96DL1 559 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 ZDHHC3Q9NYG2 299 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 SAMD15Q9P1V8 674 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 LRIT1Q9P2V4 623 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 PCYOX1Q9UHG3 505 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 ANAPC5Q9UJX4 755 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 TMPRSS11EQ9UL52 423 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 DNAJC16Q9Y2G8 782 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 PLEKHM1Q9Y4G2 1056 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 ADAMTS20P59510 1910 aa12.8□□□□□ -0.36
CLK3-224ENST00000568605 ACACBO00763 2458 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 MAP1BP46821 2468 aaKnown RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 TRBV5-4A0A0C4DH59 114 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 CCDC78A2IDD5 438 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 TMEM8BA6NDV4 472 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 NDC80O14777 642 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 MT-CO3P00414 261 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 RPLP0P05388 317 aaKnown RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 MLNP12872 115 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 PAMP19021 973 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 PSMA3P25788 255 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 GPR3P46089 330 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 MAZP56270 477 aaKnown RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 HHEXQ03014 270 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 DMPKQ09013 629 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 PTK6Q13882 451 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 ITIH4Q14624 930 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 CLPPQ16740 277 aaPredicted RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 MAP9Q49MG5 647 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 BCL7AQ4VC05 210 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 FNBP1LQ5T0N5 605 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 LYPLAL1Q5VWZ2 237 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 UNQ6494/PRO21346Q6UXR6 183 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 CCNI2Q6ZMN8 369 aaPredicted RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 ZNF438Q7Z4V0 828 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 SPRED1Q7Z699 444 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 PCGF5Q86SE9 256 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 SLC9B2Q86UD5 537 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 SERPINA9Q86WD7 417 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 C17orf82Q86X59 251 aaPredicted RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 CREG2Q8IUH2 290 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms