RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 GTF2H3Q13889 308 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 INSCQ1MX18 579 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 C14orf28Q4W4Y0 310 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 PCID2Q5JVF3 399 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 TMEM220Q6QAJ8 160 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 TAS2R42Q7RTR8 314 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 C11orf96Q7Z7L8 435 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 CAND1Q86VP6 1230 aaKnown RBP13.18□□□□□ -0.3
VPS28-210ENST00000529182 SERPINA9Q86WD7 417 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 PIANPQ8IYJ0 282 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 NAGSQ8N159 534 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 NXPE1Q8N323 547 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 MPP5Q8N3R9 675 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 BEND7Q8N7W2 519 aaPredicted RBP13.18□□□□□ -0.3
VPS28-210ENST00000529182 SLCO2A1Q92959 643 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 CCDC74AQ96AQ1 378 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 ULK4Q96C45 1275 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 SGF29Q96ES7 293 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 C19orf43Q9BQ61 176 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 TRIM51Q9BSJ1 452 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 OSGEPL1Q9H4B0 414 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 EVA1BQ9NVM1 165 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 NCKIPSDQ9NZQ3 722 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 BFARQ9NZS9 450 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 RNF14Q9UBS8 474 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 TBC1D29Q9UFV1 150 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 ASIC3Q9UHC3 531 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 ASXL3Q9C0F0 2248 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 WDFY3Q8IZQ1 3526 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 FRYQ5TBA9 3013 aa13.18□□□□□ -0.3
VPS28-210ENST00000529182 ARHGEF17Q96PE2 2063 aaPredicted RBP13.17□□□□□ -0.3
VPS28-210ENST00000529182 TRBV5-4A0A0C4DH59 114 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 KMOO15229 486 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 TTI1O43156 1089 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 GOT2P00505 430 aaKnown RBP13.17□□□□□ -0.3
VPS28-210ENST00000529182 ACRV1P26436 265 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 NMBRP28336 390 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 FOXN2P32314 431 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 NPY2RP49146 381 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 INSM1Q01101 510 aaPredicted RBP13.17□□□□□ -0.3
VPS28-210ENST00000529182 DR1Q01658 176 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 CACNG1Q06432 222 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 C2orf54Q08AI8 447 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 ILKQ13418 452 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 HLTFQ14527 1009 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS28-210ENST00000529182 SMAD1Q15797 465 aaKnown RBP13.17□□□□□ -0.3
VPS28-210ENST00000529182 FNBP1LQ5T0N5 605 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 RNASEH2BQ5TBB1 312 aaKnown RBP13.17□□□□□ -0.3
VPS28-210ENST00000529182 HES3Q5TGS1 186 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 CES3Q6UWW8 571 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 JAMLQ86YT9 394 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 ARL14Q8N4G2 192 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 NAT8LQ8N9F0 302 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 MAPK15Q8TD08 544 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 TRIM44Q96DX7 344 aaPredicted RBP13.17□□□□□ -0.3
VPS28-210ENST00000529182 KRT12Q99456 494 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 CCDC3Q9BQI4 270 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 ZCCHC2Q9C0B9 1178 aaKnown RBP13.17□□□□□ -0.3
VPS28-210ENST00000529182 IL22Q9GZX6 179 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 PRDM8Q9NQV8 689 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 ANGPTL2Q9UKU9 493 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 RNF215Q9Y6U7 377 aa13.17□□□□□ -0.3
VPS28-210ENST00000529182 RP1P56715 2156 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 A6NCN8 305 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 CCDC188H7C350 402 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 AP3B1O00203 1094 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 DNALI1O14645 258 aaPredicted RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 SGTAO43765 313 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 OPA1O60313 960 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 POP7O75817 140 aaKnown RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 GP1BAP07359 652 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 IVDP26440 423 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 PBLDP30039 288 aaPredicted RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 SARNPP82979 210 aaKnown RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 ACVR1Q04771 509 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 LAMB3Q13751 1172 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 SEPT7Q16181 437 aaKnown RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 DBN1Q16643 649 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 GPR33Q49SQ1 333 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 TMPRSS7Q7RTY8 843 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 C17orf82Q86X59 251 aaPredicted RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 PPIL6Q8IXY8 311 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 Q8N9G6 341 aaPredicted RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 MCUQ8NE86 351 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 SPATA4Q8NEY3 305 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 OR6P1Q8NGX9 317 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 SLC37A2Q8TED4 501 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 NAT6Q93015 286 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 DCUN1D1Q96GG9 259 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 SERPINB12Q96P63 405 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 COPS8Q99627 209 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 TRIM56Q9BRZ2 755 aaKnown RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 TIMM29Q9BSF4 260 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 ZDHHC3Q9NYG2 299 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 SCHIP1Q9P0W5 487 aaPredicted RBP13.16□□□□□ -0.3
VPS28-210ENST00000529182 LRIT1Q9P2V4 623 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 FAM8A1Q9UBU6 413 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 RIMKLBQ9ULI2 386 aa13.16□□□□□ -0.3
VPS28-210ENST00000529182 PRR19A6NJB7 356 aa13.15□□□□□ -0.3
VPS28-210ENST00000529182 PPM1DO15297 605 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms