RNA–Protein interactions for RNA: ENST00000614198.4

GGA3-221, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 3,438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-221ENST00000614198 WDR63Q8IWG1 891 aa12.71□□□□□ -0.37
GGA3-221ENST00000614198 PANK1Q8TE04 598 aa12.71□□□□□ -0.37
GGA3-221ENST00000614198 ANKRD24Q8TF21 1146 aa12.71□□□□□ -0.38
GGA3-221ENST00000614198 IGSF1Q8N6C5 1336 aa12.7□□□□□ -0.38
GGA3-221ENST00000614198 CCDC27Q2M243 656 aa12.7□□□□□ -0.38
GGA3-221ENST00000614198 RGPD1P0DJD0 1748 aa12.7□□□□□ -0.38
GGA3-221ENST00000614198 MBIPQ9NS73 344 aa12.7□□□□□ -0.38
GGA3-221ENST00000614198 PXDNQ92626 1479 aa12.7□□□□□ -0.38
GGA3-221ENST00000614198 SPATA31A3Q5VYP0 1347 aa12.7□□□□□ -0.38
GGA3-221ENST00000614198 EP400Q96L91 3159 aa12.69□□□□□ -0.38
GGA3-221ENST00000614198 RARSP54136 660 aaKnown RBP12.69□□□□□ -0.38
GGA3-221ENST00000614198 KIAA0232Q92628 1395 aa12.69□□□□□ -0.38
GGA3-221ENST00000614198 ALS2Q96Q42 1657 aa12.68□□□□□ -0.38
GGA3-221ENST00000614198 RLBP1P12271 317 aa12.68□□□□□ -0.38
GGA3-221ENST00000614198 C8orf58Q8NAV2 365 aa12.68□□□□□ -0.38
GGA3-221ENST00000614198 KCNH5Q8NCM2 988 aa12.68□□□□□ -0.38
GGA3-221ENST00000614198 LGR6Q9HBX8 967 aa12.68□□□□□ -0.38
GGA3-221ENST00000614198 USP19O94966 1318 aa12.67□□□□□ -0.38
GGA3-221ENST00000614198 NLRP2Q9NX02 1062 aa12.67□□□□□ -0.38
GGA3-221ENST00000614198 DCCP43146 1447 aa12.67□□□□□ -0.38
GGA3-221ENST00000614198 HAP1P54257 671 aaPredicted RBP12.67□□□□□ -0.38
GGA3-221ENST00000614198 SSH1Q8WYL5 1049 aa12.66□□□□□ -0.38
GGA3-221ENST00000614198 NECTIN2Q92692 538 aa12.66□□□□□ -0.38
GGA3-221ENST00000614198 COG6Q9Y2V7 657 aa12.66□□□□□ -0.38
GGA3-221ENST00000614198 KIF1AQ12756 1690 aa12.66□□□□□ -0.38
GGA3-221ENST00000614198 PNNQ9H307 717 aaKnown RBP12.66□□□□□ -0.38
GGA3-221ENST00000614198 MYH16Q9H6N6 1097 aa12.66□□□□□ -0.38
GGA3-221ENST00000614198 TNS3Q68CZ2 1445 aa12.66□□□□□ -0.38
GGA3-221ENST00000614198 CSB-PGBD3P0DP91 1061 aa12.65□□□□□ -0.38
GGA3-221ENST00000614198 CANXP27824 592 aaKnown RBP12.65□□□□□ -0.38
GGA3-221ENST00000614198 MPRIPQ6WCQ1 1025 aa12.65□□□□□ -0.38
GGA3-221ENST00000614198 IL17REQ8NFR9 667 aa12.65□□□□□ -0.38
GGA3-221ENST00000614198 STRN4Q9NRL3 753 aa12.65□□□□□ -0.38
GGA3-221ENST00000614198 ARHGEF10O15013 1369 aa12.65□□□□□ -0.38
GGA3-221ENST00000614198 KDRP35968 1356 aa12.64□□□□□ -0.39
GGA3-221ENST00000614198 NCOA3Q9Y6Q9 1424 aa12.64□□□□□ -0.39
GGA3-221ENST00000614198 SLIT3O75094 1523 aa12.64□□□□□ -0.39
GGA3-221ENST00000614198 SMC4Q9NTJ3 1288 aa12.64□□□□□ -0.39
GGA3-221ENST00000614198 ERBB3P21860 1342 aa12.64□□□□□ -0.39
GGA3-221ENST00000614198 SOS2Q07890 1332 aaPredicted RBP12.64□□□□□ -0.39
GGA3-221ENST00000614198 GOLGB1Q14789 3259 aaKnown RBP12.63□□□□□ -0.39
GGA3-221ENST00000614198 PRDM11Q9NQV5 511 aa12.63□□□□□ -0.39
GGA3-221ENST00000614198 USP54Q70EL1 1684 aa12.63□□□□□ -0.39
GGA3-221ENST00000614198 KCNQ3O43525 872 aa12.62□□□□□ -0.39
GGA3-221ENST00000614198 NOB1Q9ULX3 412 aaKnown RBP12.62□□□□□ -0.39
GGA3-221ENST00000614198 ZNF853P0CG23 659 aa12.62□□□□□ -0.39
GGA3-221ENST00000614198 CFAP44Q96MT7 982 aa12.62□□□□□ -0.39
GGA3-221ENST00000614198 VAMP4O75379 141 aa12.61□□□□□ -0.39
GGA3-221ENST00000614198 NGEFQ8N5V2 710 aa12.61□□□□□ -0.39
GGA3-221ENST00000614198 RTF1Q92541 710 aaKnown RBP12.61□□□□□ -0.39
GGA3-221ENST00000614198 LTBP4Q8N2S1 1624 aa12.61□□□□□ -0.39
GGA3-221ENST00000614198 PHRF1Q9P1Y6 1649 aaKnown RBP12.61□□□□□ -0.39
GGA3-221ENST00000614198 ADAMTS2O95450 1211 aa12.61□□□□□ -0.39
GGA3-221ENST00000614198 NUTM2BA6NNL0 878 aaPredicted RBP12.6□□□□□ -0.39
GGA3-221ENST00000614198 NUTM2EB1AL46 878 aaPredicted RBP12.6□□□□□ -0.39
GGA3-221ENST00000614198 NUTM2AQ8IVF1 878 aaPredicted RBP12.6□□□□□ -0.39
GGA3-221ENST00000614198 ROBO1Q9Y6N7 1651 aa12.6□□□□□ -0.39
GGA3-221ENST00000614198 GNAT3A8MTJ3 354 aa12.6□□□□□ -0.39
GGA3-221ENST00000614198 ZNF530Q6P9A1 599 aaPredicted RBP12.6□□□□□ -0.39
GGA3-221ENST00000614198 FRAT2O75474 233 aaPredicted RBP12.6□□□□□ -0.39
GGA3-221ENST00000614198 TWISTNBQ3B726 338 aaPredicted RBP12.6□□□□□ -0.39
GGA3-221ENST00000614198 LARP1Q6PKG0 1096 aaKnown RBP12.6□□□□□ -0.39
GGA3-221ENST00000614198 ZNF428Q96B54 188 aa12.6□□□□□ -0.39
GGA3-221ENST00000614198 RGS3P49796 1198 aa12.59□□□□□ -0.39
GGA3-221ENST00000614198 IFT57Q9NWB7 429 aa12.59□□□□□ -0.39
GGA3-221ENST00000614198 CRB1P82279 1406 aa12.59□□□□□ -0.39
GGA3-221ENST00000614198 GNAI1P63096 354 aa12.59□□□□□ -0.39
GGA3-221ENST00000614198 TSPYL4Q9UJ04 414 aa12.59□□□□□ -0.39
GGA3-221ENST00000614198 RTL1A6NKG5 1358 aa12.59□□□□□ -0.39
GGA3-221ENST00000614198 TRIM27P14373 513 aa12.59□□□□□ -0.39
GGA3-221ENST00000614198 CAMTA1Q9Y6Y1 1673 aa12.58□□□□□ -0.39
GGA3-221ENST00000614198 PRAMEF22A3QJZ6 481 aa12.58□□□□□ -0.4
GGA3-221ENST00000614198 AEBP2Q6ZN18 517 aaPredicted RBP12.58□□□□□ -0.4
GGA3-221ENST00000614198 CHL1O00533 1208 aa12.58□□□□□ -0.4
GGA3-221ENST00000614198 RRAGDQ9NQL2 400 aaPredicted RBP12.58□□□□□ -0.4
GGA3-221ENST00000614198 TOM1L2Q6ZVM7 507 aa12.58□□□□□ -0.4
GGA3-221ENST00000614198 CRYBG1Q9Y4K1 1723 aa12.57□□□□□ -0.4
GGA3-221ENST00000614198 IL16Q14005 1332 aa12.57□□□□□ -0.4
GGA3-221ENST00000614198 COL18A1P39060 1754 aa12.57□□□□□ -0.4
GGA3-221ENST00000614198 MEGF6O75095 1541 aa12.57□□□□□ -0.4
GGA3-221ENST00000614198 GAS2L2Q8NHY3 880 aa12.57□□□□□ -0.4
GGA3-221ENST00000614198 BTG4Q9NY30 223 aa12.57□□□□□ -0.4
GGA3-221ENST00000614198 UBAP1LF5GYI3 381 aa12.56□□□□□ -0.4
GGA3-221ENST00000614198 KIF24Q5T7B8 1368 aa12.56□□□□□ -0.4
GGA3-221ENST00000614198 SLC39A6Q13433 755 aa12.56□□□□□ -0.4
GGA3-221ENST00000614198 MAP3K5Q99683 1374 aa12.56□□□□□ -0.4
GGA3-221ENST00000614198 LMOD3Q0VAK6 560 aa12.56□□□□□ -0.4
GGA3-221ENST00000614198 IGHDP01880 384 aa12.55□□□□□ -0.4
GGA3-221ENST00000614198 ANXA1P04083 346 aa12.55□□□□□ -0.4
GGA3-221ENST00000614198 G2E3Q7L622 706 aa12.55□□□□□ -0.4
GGA3-221ENST00000614198 RRP9O43818 475 aaKnown RBP12.55□□□□□ -0.4
GGA3-221ENST00000614198 TMEM57Q8N5G2 664 aa12.55□□□□□ -0.4
GGA3-221ENST00000614198 EVA1CP58658 441 aa12.54□□□□□ -0.4
GGA3-221ENST00000614198 RAPGEF4Q8WZA2 1011 aa12.54□□□□□ -0.4
GGA3-221ENST00000614198 MRPL50Q8N5N7 158 aaKnown RBP12.54□□□□□ -0.4
GGA3-221ENST00000614198 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.54□□□□□ -0.4
GGA3-221ENST00000614198 DDX54Q8TDD1 881 aaKnown RBP12.54□□□□□ -0.4
GGA3-221ENST00000614198 C1orf115Q9H7X2 142 aa12.54□□□□□ -0.4
GGA3-221ENST00000614198 CYP27B1O15528 508 aa12.53□□□□□ -0.4
GGA3-221ENST00000614198 ITPRIPQ8IWB1 547 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms