RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 USP17L8P0C7I0 530 aa11.45□□□□□ -0.58
SMCHD1-207ENST00000581711 RHOQP17081 205 aa11.45□□□□□ -0.58
SMCHD1-207ENST00000581711 RNF144AP50876 292 aaPredicted RBP11.45□□□□□ -0.58
SMCHD1-207ENST00000581711 ZNF837Q96EG3 531 aaPredicted RBP11.45□□□□□ -0.58
SMCHD1-207ENST00000581711 ENAMQ9NRM1 1142 aa11.44□□□□□ -0.58
SMCHD1-207ENST00000581711 SEPT12Q8IYM1 358 aa11.43□□□□□ -0.58
SMCHD1-207ENST00000581711 TRIM22Q8IYM9 498 aa11.43□□□□□ -0.58
SMCHD1-207ENST00000581711 DDRGK1Q96HY6 314 aa11.43□□□□□ -0.58
SMCHD1-207ENST00000581711 FAM117AQ9C073 453 aa11.43□□□□□ -0.58
SMCHD1-207ENST00000581711 MBIPQ9NS73 344 aa11.43□□□□□ -0.58
SMCHD1-207ENST00000581711 GMCL1Q96IK5 515 aa11.42□□□□□ -0.58
SMCHD1-207ENST00000581711 KDM4CQ9H3R0 1056 aa11.42□□□□□ -0.58
SMCHD1-207ENST00000581711 GPR25O00155 361 aa11.41□□□□□ -0.58
SMCHD1-207ENST00000581711 GPBP1L1Q9HC44 474 aaPredicted RBP11.41□□□□□ -0.58
SMCHD1-207ENST00000581711 ATP5J2-PTCD1G3V325 749 aa11.4□□□□□ -0.58
SMCHD1-207ENST00000581711 IGF1RP08069 1367 aa11.4□□□□□ -0.59
SMCHD1-207ENST00000581711 DBN1Q16643 649 aa11.39□□□□□ -0.59
SMCHD1-207ENST00000581711 FOXR1Q6PIV2 292 aa11.39□□□□□ -0.59
SMCHD1-207ENST00000581711 TRIM52Q96A61 297 aa11.39□□□□□ -0.59
SMCHD1-207ENST00000581711 CNTNAP5Q8WYK1 1306 aa11.38□□□□□ -0.59
SMCHD1-207ENST00000581711 MEN1O00255 615 aa11.38□□□□□ -0.59
SMCHD1-207ENST00000581711 GPC1P35052 558 aa11.38□□□□□ -0.59
SMCHD1-207ENST00000581711 RIPOR1Q6ZS17 1223 aa11.38□□□□□ -0.59
SMCHD1-207ENST00000581711 PHF20L1A8MW92 1017 aa11.37□□□□□ -0.59
SMCHD1-207ENST00000581711 DCAF5Q96JK2 942 aa11.37□□□□□ -0.59
SMCHD1-207ENST00000581711 BCRP11274 1271 aa11.36□□□□□ -0.59
SMCHD1-207ENST00000581711 PLA2G4EQ3MJ16 856 aa11.36□□□□□ -0.59
SMCHD1-207ENST00000581711 TRIM34Q9BYJ4 488 aa11.36□□□□□ -0.59
SMCHD1-207ENST00000581711 DYRK1BQ9Y463 629 aa11.36□□□□□ -0.59
SMCHD1-207ENST00000581711 GIGYF1O75420 1035 aaPredicted RBP11.35□□□□□ -0.59
SMCHD1-207ENST00000581711 RFC5P40937 340 aa11.35□□□□□ -0.59
SMCHD1-207ENST00000581711 GTPBP3Q969Y2 492 aaKnown RBP11.35□□□□□ -0.59
SMCHD1-207ENST00000581711 A0A1W2PRU2 124 aa11.34□□□□□ -0.59
SMCHD1-207ENST00000581711 MSTNO14793 375 aa11.34□□□□□ -0.59
SMCHD1-207ENST00000581711 PODNQ7Z5L7 613 aa11.34□□□□□ -0.59
SMCHD1-207ENST00000581711 BEND7Q8N7W2 519 aaPredicted RBP11.34□□□□□ -0.59
SMCHD1-207ENST00000581711 NEDD1Q8NHV4 660 aa11.34□□□□□ -0.59
SMCHD1-207ENST00000581711 ACDQ96AP0 544 aa11.34□□□□□ -0.59
SMCHD1-207ENST00000581711 H7C1W4 665 aa11.33□□□□□ -0.6
SMCHD1-207ENST00000581711 POU4F2Q12837 409 aa11.33□□□□□ -0.6
SMCHD1-207ENST00000581711 GAS2L1Q99501 681 aaPredicted RBP11.33□□□□□ -0.6
SMCHD1-207ENST00000581711 SPOCK3Q9BQ16 436 aa11.33□□□□□ -0.6
SMCHD1-207ENST00000581711 PCDHB9Q9Y5E1 797 aa11.33□□□□□ -0.6
SMCHD1-207ENST00000581711 ITGB2P05107 769 aa11.32□□□□□ -0.6
SMCHD1-207ENST00000581711 ERVK-9P63128 1117 aa11.32□□□□□ -0.6
SMCHD1-207ENST00000581711 TRERF1Q96PN7 1200 aa11.32□□□□□ -0.6
SMCHD1-207ENST00000581711 ZBBXA8MT70 800 aa11.31□□□□□ -0.6
SMCHD1-207ENST00000581711 SLC27A3Q5K4L6 730 aa11.31□□□□□ -0.6
SMCHD1-207ENST00000581711 CC2D2BQ6DHV5 1058 aa11.3□□□□□ -0.6
SMCHD1-207ENST00000581711 NLRP3Q96P20 1036 aa11.3□□□□□ -0.6
SMCHD1-207ENST00000581711 ADAM23O75077 832 aa11.29□□□□□ -0.6
SMCHD1-207ENST00000581711 FBXO45P0C2W1 286 aa11.29□□□□□ -0.6
SMCHD1-207ENST00000581711 MX2P20592 715 aa11.29□□□□□ -0.6
SMCHD1-207ENST00000581711 NBPF10Q6P3W6 841 aaKnown RBP11.29□□□□□ -0.6
SMCHD1-207ENST00000581711 CCDC125Q86Z20 511 aa11.29□□□□□ -0.6
SMCHD1-207ENST00000581711 NBPF15Q8N660 670 aa11.29□□□□□ -0.6
SMCHD1-207ENST00000581711 LRRC4BQ9NT99 713 aa11.29□□□□□ -0.6
SMCHD1-207ENST00000581711 CLN3Q13286 438 aa11.28□□□□□ -0.6
SMCHD1-207ENST00000581711 GRIP2Q9C0E4 1043 aa11.28□□□□□ -0.6
SMCHD1-207ENST00000581711 SLC24A1O60721 1099 aa11.27□□□□□ -0.61
SMCHD1-207ENST00000581711 PROCP04070 461 aa11.27□□□□□ -0.61
SMCHD1-207ENST00000581711 NSFL1CQ9UNZ2 370 aaKnown RBP11.27□□□□□ -0.61
SMCHD1-207ENST00000581711 SPATA31C2B4DYI2 1134 aa11.26□□□□□ -0.61
SMCHD1-207ENST00000581711 WDR44Q5JSH3 913 aa11.26□□□□□ -0.61
SMCHD1-207ENST00000581711 CYP2U1Q7Z449 544 aa11.26□□□□□ -0.61
SMCHD1-207ENST00000581711 SCTRP47872 440 aa11.25□□□□□ -0.61
SMCHD1-207ENST00000581711 RNF20Q5VTR2 975 aa11.25□□□□□ -0.61
SMCHD1-207ENST00000581711 NUCKS1Q9H1E3 243 aaKnown RBP11.25□□□□□ -0.61
SMCHD1-207ENST00000581711 OIP5O43482 229 aa11.24□□□□□ -0.61
SMCHD1-207ENST00000581711 XP32Q5T750 250 aa11.24□□□□□ -0.61
SMCHD1-207ENST00000581711 GJD4Q96KN9 370 aaPredicted RBP11.24□□□□□ -0.61
SMCHD1-207ENST00000581711 ARHGEF10LQ9HCE6 1279 aa11.24□□□□□ -0.61
SMCHD1-207ENST00000581711 TIMMDC1Q9NPL8 285 aa11.24□□□□□ -0.61
SMCHD1-207ENST00000581711 TMEM259Q4ZIN3 620 aa11.23□□□□□ -0.61
SMCHD1-207ENST00000581711 TAS1R3Q7RTX0 852 aa11.23□□□□□ -0.61
SMCHD1-207ENST00000581711 GALNT6Q8NCL4 622 aa11.23□□□□□ -0.61
SMCHD1-207ENST00000581711 WASLO00401 505 aaPredicted RBP11.22□□□□□ -0.61
SMCHD1-207ENST00000581711 F11P03951 625 aa11.22□□□□□ -0.61
SMCHD1-207ENST00000581711 OXCT2Q9BYC2 517 aaPredicted RBP11.22□□□□□ -0.61
SMCHD1-207ENST00000581711 OSBPL3Q9H4L5 887 aa11.22□□□□□ -0.61
SMCHD1-207ENST00000581711 TRAK2O60296 914 aa11.21□□□□□ -0.61
SMCHD1-207ENST00000581711 PCDHB11Q9Y5F2 797 aa11.21□□□□□ -0.61
SMCHD1-207ENST00000581711 THBS1P07996 1170 aa11.2□□□□□ -0.62
SMCHD1-207ENST00000581711 MAP2K3P46734 347 aa11.2□□□□□ -0.62
SMCHD1-207ENST00000581711 SNRPNP63162 240 aaKnown RBP11.2□□□□□ -0.62
SMCHD1-207ENST00000581711 GOPCQ9HD26 462 aa11.19□□□□□ -0.62
SMCHD1-207ENST00000581711 RAB6BQ9NRW1 208 aa11.19□□□□□ -0.62
SMCHD1-207ENST00000581711 MCCD1P59942 119 aaPredicted RBP11.18□□□□□ -0.62
SMCHD1-207ENST00000581711 PCMTD1Q96MG8 357 aaPredicted RBP11.18□□□□□ -0.62
SMCHD1-207ENST00000581711 CFHR5Q9BXR6 569 aa11.18□□□□□ -0.62
SMCHD1-207ENST00000581711 SHISA8B8ZZ34 492 aa11.17□□□□□ -0.62
SMCHD1-207ENST00000581711 NR1H3Q13133 447 aa11.17□□□□□ -0.62
SMCHD1-207ENST00000581711 ESF1Q9H501 851 aaKnown RBP11.17□□□□□ -0.62
SMCHD1-207ENST00000581711 GPAMQ9HCL2 828 aa11.17□□□□□ -0.62
SMCHD1-207ENST00000581711 ZNF592Q92610 1267 aa11.16□□□□□ -0.62
SMCHD1-207ENST00000581711 KRBA1A5PL33 1030 aa11.15□□□□□ -0.62
SMCHD1-207ENST00000581711 CNKSR1Q969H4 720 aa11.15□□□□□ -0.62
SMCHD1-207ENST00000581711 ESYT1Q9BSJ8 1104 aa11.15□□□□□ -0.62
SMCHD1-207ENST00000581711 MKL2Q9ULH7 1088 aa11.15□□□□□ -0.62
SMCHD1-207ENST00000581711 K7ELQ4 463 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms