RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 RNF144AP50876 292 aaPredicted RBP11.75□□□□□ -0.53
VRK1-205ENST00000555402 MBIPQ9NS73 344 aa11.75□□□□□ -0.53
VRK1-205ENST00000555402 RHOQP17081 205 aa11.74□□□□□ -0.53
VRK1-205ENST00000555402 PNMA1Q8ND90 353 aa11.74□□□□□ -0.53
VRK1-205ENST00000555402 GMCL1Q96IK5 515 aa11.74□□□□□ -0.53
VRK1-205ENST00000555402 CNTNAP5Q8WYK1 1306 aa11.74□□□□□ -0.53
VRK1-205ENST00000555402 TRIM22Q8IYM9 498 aa11.73□□□□□ -0.53
VRK1-205ENST00000555402 ZNF837Q96EG3 531 aaPredicted RBP11.73□□□□□ -0.53
VRK1-205ENST00000555402 PLA2G4EQ3MJ16 856 aa11.72□□□□□ -0.53
VRK1-205ENST00000555402 SH3D19Q5HYK7 790 aa11.72□□□□□ -0.53
VRK1-205ENST00000555402 ATP1B4Q9UN42 357 aaPredicted RBP11.72□□□□□ -0.53
VRK1-205ENST00000555402 IGF1RP08069 1367 aa11.71□□□□□ -0.53
VRK1-205ENST00000555402 PHF20L1A8MW92 1017 aa11.71□□□□□ -0.53
VRK1-205ENST00000555402 GPR25O00155 361 aa11.71□□□□□ -0.53
VRK1-205ENST00000555402 DBN1Q16643 649 aa11.71□□□□□ -0.53
VRK1-205ENST00000555402 FOXR1Q6PIV2 292 aa11.71□□□□□ -0.53
VRK1-205ENST00000555402 CYLDQ9NQC7 956 aa11.71□□□□□ -0.53
VRK1-205ENST00000555402 MSTNO14793 375 aa11.7□□□□□ -0.54
VRK1-205ENST00000555402 SEPT12Q8IYM1 358 aa11.7□□□□□ -0.54
VRK1-205ENST00000555402 BEND7Q8N7W2 519 aaPredicted RBP11.7□□□□□ -0.54
VRK1-205ENST00000555402 DCAF5Q96JK2 942 aa11.7□□□□□ -0.54
VRK1-205ENST00000555402 HMX1Q9NP08 348 aaPredicted RBP11.7□□□□□ -0.54
VRK1-205ENST00000555402 BCRP11274 1271 aa11.69□□□□□ -0.54
VRK1-205ENST00000555402 TRIM52Q96A61 297 aa11.69□□□□□ -0.54
VRK1-205ENST00000555402 RIPOR1Q6ZS17 1223 aa11.68□□□□□ -0.54
VRK1-205ENST00000555402 ATP5J2-PTCD1G3V325 749 aa11.67□□□□□ -0.54
VRK1-205ENST00000555402 NEDD1Q8NHV4 660 aa11.67□□□□□ -0.54
VRK1-205ENST00000555402 SPOCK3Q9BQ16 436 aa11.67□□□□□ -0.54
VRK1-205ENST00000555402 ADAM23O75077 832 aa11.66□□□□□ -0.54
VRK1-205ENST00000555402 ITGB2P05107 769 aa11.66□□□□□ -0.54
VRK1-205ENST00000555402 USP17L8P0C7I0 530 aa11.66□□□□□ -0.54
VRK1-205ENST00000555402 GPC1P35052 558 aa11.66□□□□□ -0.54
VRK1-205ENST00000555402 H7C1W4 665 aa11.65□□□□□ -0.54
VRK1-205ENST00000555402 PODNQ7Z5L7 613 aa11.65□□□□□ -0.54
VRK1-205ENST00000555402 ACDQ96AP0 544 aa11.65□□□□□ -0.54
VRK1-205ENST00000555402 DYRK1BQ9Y463 629 aa11.65□□□□□ -0.54
VRK1-205ENST00000555402 MEN1O00255 615 aa11.64□□□□□ -0.55
VRK1-205ENST00000555402 GTPBP3Q969Y2 492 aaKnown RBP11.64□□□□□ -0.55
VRK1-205ENST00000555402 A0A1W2PRU2 124 aa11.63□□□□□ -0.55
VRK1-205ENST00000555402 GIGYF1O75420 1035 aaPredicted RBP11.62□□□□□ -0.55
VRK1-205ENST00000555402 POU4F2Q12837 409 aa11.62□□□□□ -0.55
VRK1-205ENST00000555402 XP32Q5T750 250 aa11.62□□□□□ -0.55
VRK1-205ENST00000555402 TRERF1Q96PN7 1200 aa11.62□□□□□ -0.55
VRK1-205ENST00000555402 GAS2L1Q99501 681 aaPredicted RBP11.62□□□□□ -0.55
VRK1-205ENST00000555402 FAM117AQ9C073 453 aa11.62□□□□□ -0.55
VRK1-205ENST00000555402 DDRGK1Q96HY6 314 aa11.61□□□□□ -0.55
VRK1-205ENST00000555402 LRRC4BQ9NT99 713 aa11.61□□□□□ -0.55
VRK1-205ENST00000555402 PROCP04070 461 aa11.6□□□□□ -0.55
VRK1-205ENST00000555402 MX2P20592 715 aa11.59□□□□□ -0.55
VRK1-205ENST00000555402 SLC27A3Q5K4L6 730 aa11.59□□□□□ -0.55
VRK1-205ENST00000555402 GRIP2Q9C0E4 1043 aa11.59□□□□□ -0.55
VRK1-205ENST00000555402 KDM4CQ9H3R0 1056 aa11.59□□□□□ -0.55
VRK1-205ENST00000555402 NLRP3Q96P20 1036 aa11.58□□□□□ -0.56
VRK1-205ENST00000555402 GPBP1L1Q9HC44 474 aaPredicted RBP11.58□□□□□ -0.56
VRK1-205ENST00000555402 NSFL1CQ9UNZ2 370 aaKnown RBP11.58□□□□□ -0.56
VRK1-205ENST00000555402 RFC5P40937 340 aa11.57□□□□□ -0.56
VRK1-205ENST00000555402 ERVK-9P63128 1117 aa11.57□□□□□ -0.56
VRK1-205ENST00000555402 NBPF10Q6P3W6 841 aaKnown RBP11.57□□□□□ -0.56
VRK1-205ENST00000555402 NBPF15Q8N660 670 aa11.57□□□□□ -0.56
VRK1-205ENST00000555402 TRIM34Q9BYJ4 488 aa11.57□□□□□ -0.56
VRK1-205ENST00000555402 PCDHB9Q9Y5E1 797 aa11.57□□□□□ -0.56
VRK1-205ENST00000555402 ZBBXA8MT70 800 aa11.56□□□□□ -0.56
VRK1-205ENST00000555402 OIP5O43482 229 aa11.56□□□□□ -0.56
VRK1-205ENST00000555402 CC2D2BQ6DHV5 1058 aa11.56□□□□□ -0.56
VRK1-205ENST00000555402 CCDC125Q86Z20 511 aa11.56□□□□□ -0.56
VRK1-205ENST00000555402 GALNT6Q8NCL4 622 aa11.56□□□□□ -0.56
VRK1-205ENST00000555402 SPATA31C2B4DYI2 1134 aa11.54□□□□□ -0.56
VRK1-205ENST00000555402 WDR44Q5JSH3 913 aa11.54□□□□□ -0.56
VRK1-205ENST00000555402 NUCKS1Q9H1E3 243 aaKnown RBP11.54□□□□□ -0.56
VRK1-205ENST00000555402 CLN3Q13286 438 aa11.53□□□□□ -0.56
VRK1-205ENST00000555402 TIMMDC1Q9NPL8 285 aa11.53□□□□□ -0.56
VRK1-205ENST00000555402 F11P03951 625 aa11.52□□□□□ -0.57
VRK1-205ENST00000555402 SNRPNP63162 240 aaKnown RBP11.52□□□□□ -0.57
VRK1-205ENST00000555402 RNF20Q5VTR2 975 aa11.51□□□□□ -0.57
VRK1-205ENST00000555402 CYP2U1Q7Z449 544 aa11.51□□□□□ -0.57
VRK1-205ENST00000555402 OXCT2Q9BYC2 517 aaPredicted RBP11.51□□□□□ -0.57
VRK1-205ENST00000555402 FBXO45P0C2W1 286 aa11.5□□□□□ -0.57
VRK1-205ENST00000555402 MAP2K3P46734 347 aa11.5□□□□□ -0.57
VRK1-205ENST00000555402 SCTRP47872 440 aa11.5□□□□□ -0.57
VRK1-205ENST00000555402 TAS1R3Q7RTX0 852 aa11.5□□□□□ -0.57
VRK1-205ENST00000555402 CFHR5Q9BXR6 569 aa11.5□□□□□ -0.57
VRK1-205ENST00000555402 KRBA1A5PL33 1030 aa11.49□□□□□ -0.57
VRK1-205ENST00000555402 WASLO00401 505 aaPredicted RBP11.49□□□□□ -0.57
VRK1-205ENST00000555402 K7ELQ4 463 aaPredicted RBP11.48□□□□□ -0.57
VRK1-205ENST00000555402 ARHGEF10LQ9HCE6 1279 aa11.48□□□□□ -0.57
VRK1-205ENST00000555402 TRAK2O60296 914 aa11.47□□□□□ -0.57
VRK1-205ENST00000555402 THBS1P07996 1170 aa11.47□□□□□ -0.57
VRK1-205ENST00000555402 TMEM259Q4ZIN3 620 aa11.47□□□□□ -0.57
VRK1-205ENST00000555402 OSBPL3Q9H4L5 887 aa11.47□□□□□ -0.57
VRK1-205ENST00000555402 SHISA8B8ZZ34 492 aa11.46□□□□□ -0.57
VRK1-205ENST00000555402 BAG6P46379 1132 aa11.46□□□□□ -0.57
VRK1-205ENST00000555402 C1orf229Q6ZS94 237 aaPredicted RBP11.46□□□□□ -0.57
VRK1-205ENST00000555402 KLRG1Q96E93 195 aa11.46□□□□□ -0.57
VRK1-205ENST00000555402 MKL2Q9ULH7 1088 aa11.46□□□□□ -0.57
VRK1-205ENST00000555402 MCCD1P59942 119 aaPredicted RBP11.45□□□□□ -0.58
VRK1-205ENST00000555402 GJD4Q96KN9 370 aaPredicted RBP11.45□□□□□ -0.58
VRK1-205ENST00000555402 PCDHB11Q9Y5F2 797 aa11.45□□□□□ -0.58
VRK1-205ENST00000555402 ESF1Q9H501 851 aaKnown RBP11.44□□□□□ -0.58
VRK1-205ENST00000555402 ALYREFQ86V81 257 aaKnown RBP11.43□□□□□ -0.58
VRK1-205ENST00000555402 EDARADDQ8WWZ3 215 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms