RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 RAB15P59190 212 aa12.17□□□□□ -0.46
VRK1-203ENST00000555067 ENAMQ9NRM1 1142 aa12.17□□□□□ -0.46
VRK1-203ENST00000555067 MBIPQ9NS73 344 aa12.17□□□□□ -0.46
VRK1-203ENST00000555067 TRIM22Q8IYM9 498 aa12.16□□□□□ -0.46
VRK1-203ENST00000555067 PROCA1Q8NCQ7 364 aaPredicted RBP12.16□□□□□ -0.46
VRK1-203ENST00000555067 ITGB2P05107 769 aa12.15□□□□□ -0.46
VRK1-203ENST00000555067 PLA2G4EQ3MJ16 856 aa12.15□□□□□ -0.46
VRK1-203ENST00000555067 PRICKLE2Q7Z3G6 844 aa12.15□□□□□ -0.46
VRK1-203ENST00000555067 DZIP3Q86Y13 1208 aaKnown RBP12.15□□□□□ -0.46
VRK1-203ENST00000555067 SEPT12Q8IYM1 358 aa12.15□□□□□ -0.46
VRK1-203ENST00000555067 ATP1B4Q9UN42 357 aaPredicted RBP12.15□□□□□ -0.46
VRK1-203ENST00000555067 DCAF5Q96JK2 942 aa12.14□□□□□ -0.47
VRK1-203ENST00000555067 HMX1Q9NP08 348 aaPredicted RBP12.14□□□□□ -0.47
VRK1-203ENST00000555067 CNTNAP5Q8WYK1 1306 aa12.13□□□□□ -0.47
VRK1-203ENST00000555067 RHOQP17081 205 aa12.13□□□□□ -0.47
VRK1-203ENST00000555067 IGF1RP08069 1367 aa12.13□□□□□ -0.47
VRK1-203ENST00000555067 PHF20L1A8MW92 1017 aa12.12□□□□□ -0.47
VRK1-203ENST00000555067 AP1G2O75843 785 aa12.12□□□□□ -0.47
VRK1-203ENST00000555067 GPC1P35052 558 aa12.12□□□□□ -0.47
VRK1-203ENST00000555067 DBN1Q16643 649 aa12.12□□□□□ -0.47
VRK1-203ENST00000555067 ADAM23O75077 832 aa12.11□□□□□ -0.47
VRK1-203ENST00000555067 PNMA1Q8ND90 353 aa12.11□□□□□ -0.47
VRK1-203ENST00000555067 CYLDQ9NQC7 956 aa12.11□□□□□ -0.47
VRK1-203ENST00000555067 GPR25O00155 361 aa12.1□□□□□ -0.47
VRK1-203ENST00000555067 MSTNO14793 375 aa12.1□□□□□ -0.47
VRK1-203ENST00000555067 BCRP11274 1271 aa12.1□□□□□ -0.47
VRK1-203ENST00000555067 SPOCK3Q9BQ16 436 aa12.1□□□□□ -0.47
VRK1-203ENST00000555067 NEUROD2Q15784 382 aa12.09□□□□□ -0.47
VRK1-203ENST00000555067 GOPCQ9HD26 462 aa12.09□□□□□ -0.47
VRK1-203ENST00000555067 USP17L8P0C7I0 530 aa12.08□□□□□ -0.48
VRK1-203ENST00000555067 BEND7Q8N7W2 519 aaPredicted RBP12.08□□□□□ -0.48
VRK1-203ENST00000555067 ACDQ96AP0 544 aa12.08□□□□□ -0.48
VRK1-203ENST00000555067 LRRC4BQ9NT99 713 aa12.08□□□□□ -0.48
VRK1-203ENST00000555067 DYRK1BQ9Y463 629 aa12.08□□□□□ -0.48
VRK1-203ENST00000555067 ATP5J2-PTCD1G3V325 749 aa12.07□□□□□ -0.48
VRK1-203ENST00000555067 PROCP04070 461 aa12.07□□□□□ -0.48
VRK1-203ENST00000555067 XP32Q5T750 250 aa12.07□□□□□ -0.48
VRK1-203ENST00000555067 FOXR1Q6PIV2 292 aa12.07□□□□□ -0.48
VRK1-203ENST00000555067 TRIM52Q96A61 297 aa12.07□□□□□ -0.48
VRK1-203ENST00000555067 H7C1W4 665 aa12.04□□□□□ -0.48
VRK1-203ENST00000555067 NEDD1Q8NHV4 660 aa12.04□□□□□ -0.48
VRK1-203ENST00000555067 GTPBP3Q969Y2 492 aaKnown RBP12.04□□□□□ -0.48
VRK1-203ENST00000555067 PCMTD1Q96MG8 357 aaPredicted RBP12.04□□□□□ -0.48
VRK1-203ENST00000555067 RIPOR1Q6ZS17 1223 aa12.03□□□□□ -0.48
VRK1-203ENST00000555067 PODNQ7Z5L7 613 aa12.03□□□□□ -0.48
VRK1-203ENST00000555067 TRIM34Q9BYJ4 488 aa12.03□□□□□ -0.48
VRK1-203ENST00000555067 A0A1W2PRU2 124 aa12.02□□□□□ -0.49
VRK1-203ENST00000555067 GIGYF1O75420 1035 aaPredicted RBP12.02□□□□□ -0.49
VRK1-203ENST00000555067 MEN1O00255 615 aa12.01□□□□□ -0.49
VRK1-203ENST00000555067 RFC5P40937 340 aa12.01□□□□□ -0.49
VRK1-203ENST00000555067 ERVK-9P63128 1117 aa12.01□□□□□ -0.49
VRK1-203ENST00000555067 GRIP2Q9C0E4 1043 aa12.01□□□□□ -0.49
VRK1-203ENST00000555067 POU4F2Q12837 409 aa12□□□□□ -0.49
VRK1-203ENST00000555067 CCDC125Q86Z20 511 aa12□□□□□ -0.49
VRK1-203ENST00000555067 TRERF1Q96PN7 1200 aa12□□□□□ -0.49
VRK1-203ENST00000555067 SPATA31C2B4DYI2 1134 aa11.99□□□□□ -0.49
VRK1-203ENST00000555067 OIP5O43482 229 aa11.99□□□□□ -0.49
VRK1-203ENST00000555067 BRPF1P55201 1214 aaPredicted RBP11.99□□□□□ -0.49
VRK1-203ENST00000555067 WDR44Q5JSH3 913 aa11.99□□□□□ -0.49
VRK1-203ENST00000555067 MX2P20592 715 aa11.98□□□□□ -0.49
VRK1-203ENST00000555067 CC2D2BQ6DHV5 1058 aa11.98□□□□□ -0.49
VRK1-203ENST00000555067 NBPF10Q6P3W6 841 aaKnown RBP11.98□□□□□ -0.49
VRK1-203ENST00000555067 NBPF15Q8N660 670 aa11.98□□□□□ -0.49
VRK1-203ENST00000555067 GAS2L1Q99501 681 aaPredicted RBP11.98□□□□□ -0.49
VRK1-203ENST00000555067 IL27Q8NEV9 243 aa11.97□□□□□ -0.49
VRK1-203ENST00000555067 ZBBXA8MT70 800 aa11.96□□□□□ -0.49
VRK1-203ENST00000555067 CLN3Q13286 438 aa11.96□□□□□ -0.49
VRK1-203ENST00000555067 TMEM259Q4ZIN3 620 aa11.96□□□□□ -0.49
VRK1-203ENST00000555067 NSFL1CQ9UNZ2 370 aaKnown RBP11.96□□□□□ -0.49
VRK1-203ENST00000555067 TPRNQ4KMQ1 711 aa11.95□□□□□ -0.5
VRK1-203ENST00000555067 SLC27A3Q5K4L6 730 aa11.95□□□□□ -0.5
VRK1-203ENST00000555067 THBS1P07996 1170 aa11.94□□□□□ -0.5
VRK1-203ENST00000555067 NLRP3Q96P20 1036 aa11.94□□□□□ -0.5
VRK1-203ENST00000555067 NUCKS1Q9H1E3 243 aaKnown RBP11.94□□□□□ -0.5
VRK1-203ENST00000555067 PCDHB9Q9Y5E1 797 aa11.94□□□□□ -0.5
VRK1-203ENST00000555067 FBXO45P0C2W1 286 aa11.93□□□□□ -0.5
VRK1-203ENST00000555067 SNRPNP63162 240 aaKnown RBP11.93□□□□□ -0.5
VRK1-203ENST00000555067 GALNT6Q8NCL4 622 aa11.93□□□□□ -0.5
VRK1-203ENST00000555067 TRAK2O60296 914 aa11.92□□□□□ -0.5
VRK1-203ENST00000555067 F11P03951 625 aa11.92□□□□□ -0.5
VRK1-203ENST00000555067 MAP2K3P46734 347 aa11.92□□□□□ -0.5
VRK1-203ENST00000555067 CYP2U1Q7Z449 544 aa11.92□□□□□ -0.5
VRK1-203ENST00000555067 CFHR5Q9BXR6 569 aa11.92□□□□□ -0.5
VRK1-203ENST00000555067 OXCT2Q9BYC2 517 aaPredicted RBP11.92□□□□□ -0.5
VRK1-203ENST00000555067 KRBA1A5PL33 1030 aa11.91□□□□□ -0.5
VRK1-203ENST00000555067 SCTRP47872 440 aa11.91□□□□□ -0.5
VRK1-203ENST00000555067 RNF20Q5VTR2 975 aa11.91□□□□□ -0.5
VRK1-203ENST00000555067 TIMMDC1Q9NPL8 285 aa11.91□□□□□ -0.5
VRK1-203ENST00000555067 WASLO00401 505 aaPredicted RBP11.9□□□□□ -0.5
VRK1-203ENST00000555067 TAS1R3Q7RTX0 852 aa11.9□□□□□ -0.5
VRK1-203ENST00000555067 GJD4Q96KN9 370 aaPredicted RBP11.9□□□□□ -0.5
VRK1-203ENST00000555067 OSBPL3Q9H4L5 887 aa11.9□□□□□ -0.5
VRK1-203ENST00000555067 SHISA8B8ZZ34 492 aa11.89□□□□□ -0.51
VRK1-203ENST00000555067 K7ELQ4 463 aaPredicted RBP11.89□□□□□ -0.51
VRK1-203ENST00000555067 BAG6P46379 1132 aa11.88□□□□□ -0.51
VRK1-203ENST00000555067 C1orf229Q6ZS94 237 aaPredicted RBP11.88□□□□□ -0.51
VRK1-203ENST00000555067 ALYREFQ86V81 257 aaKnown RBP11.88□□□□□ -0.51
VRK1-203ENST00000555067 ARHGEF10LQ9HCE6 1279 aa11.88□□□□□ -0.51
VRK1-203ENST00000555067 KLRG1Q96E93 195 aa11.87□□□□□ -0.51
VRK1-203ENST00000555067 MKL2Q9ULH7 1088 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms