RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GSK3AP49840 483 aa7.42□□□□□ -1.22
NUP54-208ENST00000508604 RNF144AP50876 292 aaPredicted RBP7.42□□□□□ -1.22
NUP54-208ENST00000508604 SRSF11Q05519 484 aaKnown RBP7.42□□□□□ -1.22
NUP54-208ENST00000508604 RNF20Q5VTR2 975 aa7.42□□□□□ -1.22
NUP54-208ENST00000508604 ESF1Q9H501 851 aaKnown RBP7.42□□□□□ -1.22
NUP54-208ENST00000508604 LOC100996750A0A140TA64 210 aa7.41□□□□□ -1.22
NUP54-208ENST00000508604 KANK3Q6NY19 840 aa7.41□□□□□ -1.22
NUP54-208ENST00000508604 WHAMMQ8TF30 809 aa7.41□□□□□ -1.22
NUP54-208ENST00000508604 BCANQ96GW7 911 aa7.41□□□□□ -1.22
NUP54-208ENST00000508604 KRTAP4-6Q9BYQ5 205 aa7.41□□□□□ -1.22
NUP54-208ENST00000508604 GOPCQ9HD26 462 aa7.41□□□□□ -1.22
NUP54-208ENST00000508604 MEN1O00255 615 aa7.41□□□□□ -1.22
NUP54-208ENST00000508604 IRS1P35568 1242 aa7.41□□□□□ -1.22
NUP54-208ENST00000508604 ZNF330Q9Y3S2 320 aaPredicted RBP7.41□□□□□ -1.22
NUP54-208ENST00000508604 H7C1W4 665 aa7.4□□□□□ -1.23
NUP54-208ENST00000508604 ARHGEF15O94989 841 aa7.4□□□□□ -1.23
NUP54-208ENST00000508604 RHOQP17081 205 aa7.4□□□□□ -1.23
NUP54-208ENST00000508604 GPC1P35052 558 aa7.4□□□□□ -1.23
NUP54-208ENST00000508604 MCCD1P59942 119 aaPredicted RBP7.4□□□□□ -1.23
NUP54-208ENST00000508604 SUZ12Q15022 739 aaKnown RBP7.4□□□□□ -1.23
NUP54-208ENST00000508604 NLRP3Q96P20 1036 aa7.4□□□□□ -1.23
NUP54-208ENST00000508604 GIGYF1O75420 1035 aaPredicted RBP7.39□□□□□ -1.23
NUP54-208ENST00000508604 SLC27A3Q5K4L6 730 aa7.39□□□□□ -1.23
NUP54-208ENST00000508604 RIPOR1Q6ZS17 1223 aa7.39□□□□□ -1.23
NUP54-208ENST00000508604 KDF1Q8NAX2 398 aaPredicted RBP7.39□□□□□ -1.23
NUP54-208ENST00000508604 DNMT3AQ9Y6K1 912 aaPredicted RBP7.39□□□□□ -1.23
NUP54-208ENST00000508604 FOXK2Q01167 660 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 CC2D2BQ6DHV5 1058 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 TRERF1Q96PN7 1200 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 TRIM34Q9BYJ4 488 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 IGHA1P01876 353 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 LYPD4Q6UWN0 246 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 CYP2U1Q7Z449 544 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 TRIM22Q8IYM9 498 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 MBIPQ9NS73 344 aa7.38□□□□□ -1.23
NUP54-208ENST00000508604 A0A1W2PRU2 124 aa7.37□□□□□ -1.23
NUP54-208ENST00000508604 CELA2BP08218 269 aaPredicted RBP7.36□□□□□ -1.23
NUP54-208ENST00000508604 FBXO45P0C2W1 286 aa7.36□□□□□ -1.23
NUP54-208ENST00000508604 GPAT2Q6NUI2 795 aa7.36□□□□□ -1.23
NUP54-208ENST00000508604 ZNF837Q96EG3 531 aaPredicted RBP7.36□□□□□ -1.23
NUP54-208ENST00000508604 GAS2L1Q99501 681 aaPredicted RBP7.36□□□□□ -1.23
NUP54-208ENST00000508604 CUEDC1Q9NWM3 386 aaPredicted RBP7.36□□□□□ -1.23
NUP54-208ENST00000508604 NSFL1CQ9UNZ2 370 aaKnown RBP7.36□□□□□ -1.23
NUP54-208ENST00000508604 DYRK1BQ9Y463 629 aa7.36□□□□□ -1.23
NUP54-208ENST00000508604 PHF20L1A8MW92 1017 aa7.35□□□□□ -1.23
NUP54-208ENST00000508604 ERVK-9P63128 1117 aa7.35□□□□□ -1.23
NUP54-208ENST00000508604 GAS6Q14393 721 aa7.35□□□□□ -1.23
NUP54-208ENST00000508604 PODNQ7Z5L7 613 aa7.35□□□□□ -1.23
NUP54-208ENST00000508604 APBB1O00213 710 aa7.34□□□□□ -1.23
NUP54-208ENST00000508604 POU4F2Q12837 409 aa7.34□□□□□ -1.23
NUP54-208ENST00000508604 NR1H3Q13133 447 aa7.34□□□□□ -1.23
NUP54-208ENST00000508604 NEDD1Q8NHV4 660 aa7.34□□□□□ -1.23
NUP54-208ENST00000508604 IGF1RP08069 1367 aa7.33□□□□□ -1.24
NUP54-208ENST00000508604 GPR25O00155 361 aa7.33□□□□□ -1.24
NUP54-208ENST00000508604 NEUROD2Q15784 382 aa7.33□□□□□ -1.24
NUP54-208ENST00000508604 CLN3Q13286 438 aa7.32□□□□□ -1.24
NUP54-208ENST00000508604 DBN1Q16643 649 aa7.32□□□□□ -1.24
NUP54-208ENST00000508604 WDR44Q5JSH3 913 aa7.32□□□□□ -1.24
NUP54-208ENST00000508604 BEND7Q8N7W2 519 aaPredicted RBP7.32□□□□□ -1.24
NUP54-208ENST00000508604 IL27Q8NEV9 243 aa7.32□□□□□ -1.24
NUP54-208ENST00000508604 GTPBP3Q969Y2 492 aaKnown RBP7.32□□□□□ -1.24
NUP54-208ENST00000508604 TIMMDC1Q9NPL8 285 aa7.32□□□□□ -1.24
NUP54-208ENST00000508604 PCDHB11Q9Y5F2 797 aa7.32□□□□□ -1.24
NUP54-208ENST00000508604 BCRP11274 1271 aa7.32□□□□□ -1.24
NUP54-208ENST00000508604 GTF2E1P29083 439 aaPredicted RBP7.32□□□□□ -1.24
NUP54-208ENST00000508604 TAS1R3Q7RTX0 852 aa7.32□□□□□ -1.24
NUP54-208ENST00000508604 GJD4Q96KN9 370 aaPredicted RBP7.32□□□□□ -1.24
NUP54-208ENST00000508604 MX2P20592 715 aa7.31□□□□□ -1.24
NUP54-208ENST00000508604 NBPF10Q6P3W6 841 aaKnown RBP7.31□□□□□ -1.24
NUP54-208ENST00000508604 NBPF15Q8N660 670 aa7.31□□□□□ -1.24
NUP54-208ENST00000508604 GRIP2Q9C0E4 1043 aa7.31□□□□□ -1.24
NUP54-208ENST00000508604 SPATA31C2B4DYI2 1134 aa7.3□□□□□ -1.24
NUP54-208ENST00000508604 MYCP01106 439 aaPredicted RBP7.3□□□□□ -1.24
NUP54-208ENST00000508604 BANK1Q8NDB2 785 aa7.3□□□□□ -1.24
NUP54-208ENST00000508604 NUCKS1Q9H1E3 243 aaKnown RBP7.3□□□□□ -1.24
NUP54-208ENST00000508604 ARHGEF10LQ9HCE6 1279 aa7.3□□□□□ -1.24
NUP54-208ENST00000508604 NDUFB9Q9Y6M9 179 aa7.3□□□□□ -1.24
NUP54-208ENST00000508604 WASLO00401 505 aaPredicted RBP7.29□□□□□ -1.24
NUP54-208ENST00000508604 F11P03951 625 aa7.29□□□□□ -1.24
NUP54-208ENST00000508604 GNRH1P01148 92 aa7.28□□□□□ -1.24
NUP54-208ENST00000508604 LRRC4BQ9NT99 713 aa7.28□□□□□ -1.24
NUP54-208ENST00000508604 PHF24Q9UPV7 400 aa7.28□□□□□ -1.24
NUP54-208ENST00000508604 MAP2K3P46734 347 aa7.28□□□□□ -1.24
NUP54-208ENST00000508604 SCTRP47872 440 aa7.28□□□□□ -1.24
NUP54-208ENST00000508604 CNTNAP5Q8WYK1 1306 aa7.27□□□□□ -1.25
NUP54-208ENST00000508604 SOCS7O14512 581 aa7.27□□□□□ -1.25
NUP54-208ENST00000508604 OSBPL3Q9H4L5 887 aa7.27□□□□□ -1.25
NUP54-208ENST00000508604 MSTNO14793 375 aa7.26□□□□□ -1.25
NUP54-208ENST00000508604 TRAK2O60296 914 aa7.26□□□□□ -1.25
NUP54-208ENST00000508604 GNASQ5JWF2 1037 aa7.26□□□□□ -1.25
NUP54-208ENST00000508604 CNKSR1Q969H4 720 aa7.26□□□□□ -1.25
NUP54-208ENST00000508604 ACDQ96AP0 544 aa7.26□□□□□ -1.25
NUP54-208ENST00000508604 ESYT1Q9BSJ8 1104 aa7.26□□□□□ -1.25
NUP54-208ENST00000508604 PRM3Q9NNZ6 103 aa7.26□□□□□ -1.25
NUP54-208ENST00000508604 RAB6BQ9NRW1 208 aa7.26□□□□□ -1.25
NUP54-208ENST00000508604 CSB-PGBD3P0DP91 1061 aa7.25□□□□□ -1.25
NUP54-208ENST00000508604 ESCO1Q5FWF5 840 aa7.25□□□□□ -1.25
NUP54-208ENST00000508604 PGBD3Q8N328 593 aa7.25□□□□□ -1.25
NUP54-208ENST00000508604 ZSCAN10Q96SZ4 725 aaPredicted RBP7.25□□□□□ -1.25
NUP54-208ENST00000508604 CFHR5Q9BXR6 569 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms