RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TMEM259Q4ZIN3 620 aa10.3□□□□□ -0.76
VPS50-219ENST00000495039 PRICKLE2Q7Z3G6 844 aa10.3□□□□□ -0.76
VPS50-219ENST00000495039 CCDC125Q86Z20 511 aa10.3□□□□□ -0.76
VPS50-219ENST00000495039 PCMTD1Q96MG8 357 aaPredicted RBP10.3□□□□□ -0.76
VPS50-219ENST00000495039 MAP3K10Q02779 954 aa10.29□□□□□ -0.76
VPS50-219ENST00000495039 GMCL1Q96IK5 515 aa10.29□□□□□ -0.76
VPS50-219ENST00000495039 CUEDC1Q9NWM3 386 aaPredicted RBP10.29□□□□□ -0.76
VPS50-219ENST00000495039 PCDHB9Q9Y5E1 797 aa10.29□□□□□ -0.76
VPS50-219ENST00000495039 GPC1P35052 558 aa10.28□□□□□ -0.76
VPS50-219ENST00000495039 IRS1P35568 1242 aa10.28□□□□□ -0.76
VPS50-219ENST00000495039 SCARF2Q96GP6 870 aaPredicted RBP10.28□□□□□ -0.76
VPS50-219ENST00000495039 GIGYF1O75420 1035 aaPredicted RBP10.27□□□□□ -0.77
VPS50-219ENST00000495039 RHOQP17081 205 aa10.27□□□□□ -0.77
VPS50-219ENST00000495039 GAS6Q14393 721 aa10.27□□□□□ -0.77
VPS50-219ENST00000495039 KANK3Q6NY19 840 aa10.27□□□□□ -0.77
VPS50-219ENST00000495039 DNMT3AQ9Y6K1 912 aaPredicted RBP10.27□□□□□ -0.77
VPS50-219ENST00000495039 FOXR1Q6PIV2 292 aa10.26□□□□□ -0.77
VPS50-219ENST00000495039 LYPD4Q6UWN0 246 aa10.26□□□□□ -0.77
VPS50-219ENST00000495039 MEN1O00255 615 aa10.25□□□□□ -0.77
VPS50-219ENST00000495039 FBXO45P0C2W1 286 aa10.25□□□□□ -0.77
VPS50-219ENST00000495039 RNF20Q5VTR2 975 aa10.25□□□□□ -0.77
VPS50-219ENST00000495039 TRIM22Q8IYM9 498 aa10.25□□□□□ -0.77
VPS50-219ENST00000495039 ZNF837Q96EG3 531 aaPredicted RBP10.25□□□□□ -0.77
VPS50-219ENST00000495039 ERVK-9P63128 1117 aa10.24□□□□□ -0.77
VPS50-219ENST00000495039 CC2D2BQ6DHV5 1058 aa10.24□□□□□ -0.77
VPS50-219ENST00000495039 BCANQ96GW7 911 aa10.24□□□□□ -0.77
VPS50-219ENST00000495039 ENAMQ9NRM1 1142 aa10.24□□□□□ -0.77
VPS50-219ENST00000495039 MBIPQ9NS73 344 aa10.24□□□□□ -0.77
VPS50-219ENST00000495039 A0A1W2PRU2 124 aa10.23□□□□□ -0.77
VPS50-219ENST00000495039 CELA2BP08218 269 aaPredicted RBP10.23□□□□□ -0.77
VPS50-219ENST00000495039 RIPOR1Q6ZS17 1223 aa10.23□□□□□ -0.77
VPS50-219ENST00000495039 ZNF592Q92610 1267 aa10.23□□□□□ -0.77
VPS50-219ENST00000495039 GJD4Q96KN9 370 aaPredicted RBP10.23□□□□□ -0.77
VPS50-219ENST00000495039 H7C1W4 665 aa10.22□□□□□ -0.77
VPS50-219ENST00000495039 IGHA1P01876 353 aa10.22□□□□□ -0.77
VPS50-219ENST00000495039 MCCD1P59942 119 aaPredicted RBP10.22□□□□□ -0.77
VPS50-219ENST00000495039 SLC27A3Q5K4L6 730 aa10.22□□□□□ -0.77
VPS50-219ENST00000495039 NLRP3Q96P20 1036 aa10.22□□□□□ -0.77
VPS50-219ENST00000495039 DYRK1BQ9Y463 629 aa10.22□□□□□ -0.77
VPS50-219ENST00000495039 FOXK2Q01167 660 aa10.21□□□□□ -0.77
VPS50-219ENST00000495039 GPAT2Q6NUI2 795 aa10.21□□□□□ -0.77
VPS50-219ENST00000495039 CYP2U1Q7Z449 544 aa10.21□□□□□ -0.77
VPS50-219ENST00000495039 GPR25O00155 361 aa10.2□□□□□ -0.78
VPS50-219ENST00000495039 ZNF330Q9Y3S2 320 aaPredicted RBP10.2□□□□□ -0.78
VPS50-219ENST00000495039 IGF1RP08069 1367 aa10.19□□□□□ -0.78
VPS50-219ENST00000495039 NR1H3Q13133 447 aa10.19□□□□□ -0.78
VPS50-219ENST00000495039 CLN3Q13286 438 aa10.19□□□□□ -0.78
VPS50-219ENST00000495039 DBN1Q16643 649 aa10.19□□□□□ -0.78
VPS50-219ENST00000495039 TRERF1Q96PN7 1200 aa10.19□□□□□ -0.78
VPS50-219ENST00000495039 POU4F2Q12837 409 aa10.18□□□□□ -0.78
VPS50-219ENST00000495039 GAS2L1Q99501 681 aaPredicted RBP10.18□□□□□ -0.78
VPS50-219ENST00000495039 ESF1Q9H501 851 aaKnown RBP10.18□□□□□ -0.78
VPS50-219ENST00000495039 GTPBP3Q969Y2 492 aaKnown RBP10.17□□□□□ -0.78
VPS50-219ENST00000495039 SCTRP47872 440 aa10.16□□□□□ -0.78
VPS50-219ENST00000495039 WDR44Q5JSH3 913 aa10.16□□□□□ -0.78
VPS50-219ENST00000495039 NBPF10Q6P3W6 841 aaKnown RBP10.16□□□□□ -0.78
VPS50-219ENST00000495039 NBPF15Q8N660 670 aa10.16□□□□□ -0.78
VPS50-219ENST00000495039 GRIP2Q9C0E4 1043 aa10.16□□□□□ -0.78
VPS50-219ENST00000495039 PCDHB11Q9Y5F2 797 aa10.16□□□□□ -0.78
VPS50-219ENST00000495039 PHF20L1A8MW92 1017 aa10.15□□□□□ -0.78
VPS50-219ENST00000495039 SPATA31C2B4DYI2 1134 aa10.15□□□□□ -0.78
VPS50-219ENST00000495039 BCRP11274 1271 aa10.15□□□□□ -0.78
VPS50-219ENST00000495039 ARHGEF10LQ9HCE6 1279 aa10.15□□□□□ -0.78
VPS50-219ENST00000495039 SOCS7O14512 581 aa10.14□□□□□ -0.79
VPS50-219ENST00000495039 NEUROD2Q15784 382 aa10.14□□□□□ -0.79
VPS50-219ENST00000495039 TAS1R3Q7RTX0 852 aa10.14□□□□□ -0.79
VPS50-219ENST00000495039 PODNQ7Z5L7 613 aa10.14□□□□□ -0.79
VPS50-219ENST00000495039 IL27Q8NEV9 243 aa10.14□□□□□ -0.79
VPS50-219ENST00000495039 NEDD1Q8NHV4 660 aa10.14□□□□□ -0.79
VPS50-219ENST00000495039 OSBPL3Q9H4L5 887 aa10.14□□□□□ -0.79
VPS50-219ENST00000495039 NSFL1CQ9UNZ2 370 aaKnown RBP10.14□□□□□ -0.79
VPS50-219ENST00000495039 WASLO00401 505 aaPredicted RBP10.13□□□□□ -0.79
VPS50-219ENST00000495039 TRAK2O60296 914 aa10.13□□□□□ -0.79
VPS50-219ENST00000495039 TIMMDC1Q9NPL8 285 aa10.13□□□□□ -0.79
VPS50-219ENST00000495039 MX2P20592 715 aa10.12□□□□□ -0.79
VPS50-219ENST00000495039 BEND7Q8N7W2 519 aaPredicted RBP10.12□□□□□ -0.79
VPS50-219ENST00000495039 BANK1Q8NDB2 785 aa10.12□□□□□ -0.79
VPS50-219ENST00000495039 NUCKS1Q9H1E3 243 aaKnown RBP10.12□□□□□ -0.79
VPS50-219ENST00000495039 LRRC4BQ9NT99 713 aa10.12□□□□□ -0.79
VPS50-219ENST00000495039 NDUFB9Q9Y6M9 179 aa10.12□□□□□ -0.79
VPS50-219ENST00000495039 APBB1O00213 710 aa10.11□□□□□ -0.79
VPS50-219ENST00000495039 F11P03951 625 aa10.11□□□□□ -0.79
VPS50-219ENST00000495039 ACDQ96AP0 544 aa10.11□□□□□ -0.79
VPS50-219ENST00000495039 CNTNAP5Q8WYK1 1306 aa10.1□□□□□ -0.79
VPS50-219ENST00000495039 GNRH1P01148 92 aa10.1□□□□□ -0.79
VPS50-219ENST00000495039 GPR37L1O60883 481 aa10.09□□□□□ -0.79
VPS50-219ENST00000495039 ESYT1Q9BSJ8 1104 aa10.09□□□□□ -0.79
VPS50-219ENST00000495039 RAB6BQ9NRW1 208 aa10.09□□□□□ -0.79
VPS50-219ENST00000495039 MYCP01106 439 aaPredicted RBP10.08□□□□□ -0.8
VPS50-219ENST00000495039 MTMR14Q8NCE2 650 aa10.08□□□□□ -0.8
VPS50-219ENST00000495039 CNKSR1Q969H4 720 aa10.08□□□□□ -0.8
VPS50-219ENST00000495039 DCAF5Q96JK2 942 aa10.08□□□□□ -0.8
VPS50-219ENST00000495039 MAP2K3P46734 347 aa10.07□□□□□ -0.8
VPS50-219ENST00000495039 PLA2G4EQ3MJ16 856 aa10.07□□□□□ -0.8
VPS50-219ENST00000495039 MSTNO14793 375 aa10.06□□□□□ -0.8
VPS50-219ENST00000495039 IL2RAP01589 272 aa10.06□□□□□ -0.8
VPS50-219ENST00000495039 CFHR5Q9BXR6 569 aa10.06□□□□□ -0.8
VPS50-219ENST00000495039 A0A1B0GTH6 734 aa10.05□□□□□ -0.8
VPS50-219ENST00000495039 OIP5O43482 229 aa10.05□□□□□ -0.8
VPS50-219ENST00000495039 GTF2E1P29083 439 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms