RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 GAS2L2Q8NHY3 880 aa17.99■□□□□ 0.47
SMPD4-219ENST00000491128 SMC4Q9NTJ3 1288 aa17.99■□□□□ 0.47
SMPD4-219ENST00000491128 IFT57Q9NWB7 429 aa17.99■□□□□ 0.47
SMPD4-219ENST00000491128 RGPD2P0DJD1 1756 aa17.99■□□□□ 0.47
SMPD4-219ENST00000491128 IL17REQ8NFR9 667 aa17.98■□□□□ 0.47
SMPD4-219ENST00000491128 LGR6Q9HBX8 967 aa17.98■□□□□ 0.47
SMPD4-219ENST00000491128 STRN4Q9NRL3 753 aa17.98■□□□□ 0.47
SMPD4-219ENST00000491128 DLG5Q8TDM6 1919 aa17.98■□□□□ 0.47
SMPD4-219ENST00000491128 GNAT3A8MTJ3 354 aa17.98■□□□□ 0.47
SMPD4-219ENST00000491128 CCDC136Q96JN2 1154 aa17.98■□□□□ 0.47
SMPD4-219ENST00000491128 MPRIPQ6WCQ1 1025 aa17.97■□□□□ 0.47
SMPD4-219ENST00000491128 USP35Q9P2H5 1018 aa17.97■□□□□ 0.47
SMPD4-219ENST00000491128 RGPD5Q99666 1765 aa17.96■□□□□ 0.47
SMPD4-219ENST00000491128 RLBP1P12271 317 aa17.96■□□□□ 0.47
SMPD4-219ENST00000491128 CALD1Q05682 793 aaKnown RBP17.96■□□□□ 0.47
SMPD4-219ENST00000491128 ZNF530Q6P9A1 599 aaPredicted RBP17.96■□□□□ 0.47
SMPD4-219ENST00000491128 COG6Q9Y2V7 657 aa17.96■□□□□ 0.47
SMPD4-219ENST00000491128 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.95■□□□□ 0.46
SMPD4-219ENST00000491128 VAMP4O75379 141 aa17.94■□□□□ 0.46
SMPD4-219ENST00000491128 ERICH6BQ5W0A0 696 aa17.94■□□□□ 0.46
SMPD4-219ENST00000491128 TWISTNBQ3B726 338 aaPredicted RBP17.94■□□□□ 0.46
SMPD4-219ENST00000491128 TSPYL4Q9UJ04 414 aa17.94■□□□□ 0.46
SMPD4-219ENST00000491128 PHRF1Q9P1Y6 1649 aaKnown RBP17.94■□□□□ 0.46
SMPD4-219ENST00000491128 CHL1O00533 1208 aa17.93■□□□□ 0.46
SMPD4-219ENST00000491128 NOB1Q9ULX3 412 aaKnown RBP17.93■□□□□ 0.46
SMPD4-219ENST00000491128 UBAP1LF5GYI3 381 aa17.93■□□□□ 0.46
SMPD4-219ENST00000491128 CRB1P82279 1406 aa17.93■□□□□ 0.46
SMPD4-219ENST00000491128 TOM1L2Q6ZVM7 507 aa17.93■□□□□ 0.46
SMPD4-219ENST00000491128 ROBO1Q9Y6N7 1651 aa17.93■□□□□ 0.46
SMPD4-219ENST00000491128 MAP3K5Q99683 1374 aa17.92■□□□□ 0.46
SMPD4-219ENST00000491128 PLEKHO1Q53GL0 409 aaPredicted RBP17.92■□□□□ 0.46
SMPD4-219ENST00000491128 RAPGEF4Q8WZA2 1011 aa17.92■□□□□ 0.46
SMPD4-219ENST00000491128 ADAMTS2O95450 1211 aa17.91■□□□□ 0.46
SMPD4-219ENST00000491128 LARP1Q6PKG0 1096 aaKnown RBP17.91■□□□□ 0.46
SMPD4-219ENST00000491128 NECTIN2Q92692 538 aa17.91■□□□□ 0.46
SMPD4-219ENST00000491128 NUTM2BA6NNL0 878 aaPredicted RBP17.91■□□□□ 0.46
SMPD4-219ENST00000491128 NUTM2EB1AL46 878 aaPredicted RBP17.91■□□□□ 0.46
SMPD4-219ENST00000491128 NUTM2AQ8IVF1 878 aaPredicted RBP17.91■□□□□ 0.46
SMPD4-219ENST00000491128 CPDO75976 1380 aa17.9■□□□□ 0.46
SMPD4-219ENST00000491128 EVA1CP58658 441 aa17.9■□□□□ 0.46
SMPD4-219ENST00000491128 CAMTA1Q9Y6Y1 1673 aa17.9■□□□□ 0.46
SMPD4-219ENST00000491128 SKAP1Q86WV1 359 aa17.89■□□□□ 0.46
SMPD4-219ENST00000491128 BTG4Q9NY30 223 aa17.89■□□□□ 0.46
SMPD4-219ENST00000491128 KCNQ3O43525 872 aa17.89■□□□□ 0.45
SMPD4-219ENST00000491128 TOM1O60784 492 aa17.89■□□□□ 0.45
SMPD4-219ENST00000491128 C1orf141Q5JVX7 400 aa17.89■□□□□ 0.45
SMPD4-219ENST00000491128 TRIM27P14373 513 aa17.88■□□□□ 0.45
SMPD4-219ENST00000491128 TATP17735 454 aaPredicted RBP17.87■□□□□ 0.45
SMPD4-219ENST00000491128 MEGF6O75095 1541 aa17.87■□□□□ 0.45
SMPD4-219ENST00000491128 AKAP4Q5JQC9 854 aa17.87■□□□□ 0.45
SMPD4-219ENST00000491128 ZKSCAN2Q63HK3 967 aa17.87■□□□□ 0.45
SMPD4-219ENST00000491128 NHSL1Q5SYE7 1610 aa17.87■□□□□ 0.45
SMPD4-219ENST00000491128 CRYBG1Q9Y4K1 1723 aa17.87■□□□□ 0.45
SMPD4-219ENST00000491128 COL18A1P39060 1754 aa17.87■□□□□ 0.45
SMPD4-219ENST00000491128 CT47B1P0C2W7 299 aaPredicted RBP17.86■□□□□ 0.45
SMPD4-219ENST00000491128 AMOTQ4VCS5 1084 aa17.86■□□□□ 0.45
SMPD4-219ENST00000491128 FTSJ3Q8IY81 847 aaKnown RBP17.86■□□□□ 0.45
SMPD4-219ENST00000491128 TAF7Q15545 349 aaPredicted RBP17.86■□□□□ 0.45
SMPD4-219ENST00000491128 WDR17Q8IZU2 1322 aa17.85■□□□□ 0.45
SMPD4-219ENST00000491128 MRPL50Q8N5N7 158 aaKnown RBP17.85■□□□□ 0.45
SMPD4-219ENST00000491128 HTATSF1O43719 755 aaKnown RBP17.85■□□□□ 0.45
SMPD4-219ENST00000491128 TEFQ10587 303 aa17.85■□□□□ 0.45
SMPD4-219ENST00000491128 RNMTO43148 476 aaKnown RBP17.84■□□□□ 0.45
SMPD4-219ENST00000491128 PDE3AQ14432 1141 aa17.84■□□□□ 0.45
SMPD4-219ENST00000491128 ATF7IPQ6VMQ6 1270 aa17.84■□□□□ 0.45
SMPD4-219ENST00000491128 DZIP1LQ8IYY4 767 aaKnown RBP17.84■□□□□ 0.45
SMPD4-219ENST00000491128 NCAPD2Q15021 1401 aa17.83■□□□□ 0.45
SMPD4-219ENST00000491128 COL5A2P05997 1499 aaPredicted RBP17.83■□□□□ 0.44
SMPD4-219ENST00000491128 CYP27B1O15528 508 aa17.83■□□□□ 0.44
SMPD4-219ENST00000491128 ITPRIPQ8IWB1 547 aa17.83■□□□□ 0.44
SMPD4-219ENST00000491128 BTBD11A6QL63 1104 aa17.82■□□□□ 0.44
SMPD4-219ENST00000491128 TMEM57Q8N5G2 664 aa17.82■□□□□ 0.44
SMPD4-219ENST00000491128 DDX54Q8TDD1 881 aaKnown RBP17.82■□□□□ 0.44
SMPD4-219ENST00000491128 SLC39A6Q13433 755 aa17.82■□□□□ 0.44
SMPD4-219ENST00000491128 ALDH1L2Q3SY69 923 aa17.82■□□□□ 0.44
SMPD4-219ENST00000491128 PHKG2P15735 406 aa17.81■□□□□ 0.44
SMPD4-219ENST00000491128 CEMIPQ8WUJ3 1361 aa17.81■□□□□ 0.44
SMPD4-219ENST00000491128 SLC4A2P04920 1241 aa17.8■□□□□ 0.44
SMPD4-219ENST00000491128 EIF2S2P20042 333 aaKnown RBP17.8■□□□□ 0.44
SMPD4-219ENST00000491128 NFATC2IPQ8NCF5 419 aa17.8■□□□□ 0.44
SMPD4-219ENST00000491128 SPG7Q9UQ90 795 aa17.8■□□□□ 0.44
SMPD4-219ENST00000491128 PRAMEF22A3QJZ6 481 aa17.8■□□□□ 0.44
SMPD4-219ENST00000491128 G2E3Q7L622 706 aa17.8■□□□□ 0.44
SMPD4-219ENST00000491128 KIF16BQ96L93 1317 aa17.78■□□□□ 0.44
SMPD4-219ENST00000491128 MVPQ14764 893 aaKnown RBP17.78■□□□□ 0.44
SMPD4-219ENST00000491128 IFNL2Q8IZJ0 200 aa17.78■□□□□ 0.44
SMPD4-219ENST00000491128 ABCA3Q99758 1704 aa17.78■□□□□ 0.44
SMPD4-219ENST00000491128 FAM208AQ9UK61 1670 aaKnown RBP17.77■□□□□ 0.44
SMPD4-219ENST00000491128 IGHDP01880 384 aa17.77■□□□□ 0.44
SMPD4-219ENST00000491128 CARD10Q9BWT7 1032 aa17.77■□□□□ 0.44
SMPD4-219ENST00000491128 AHDC1Q5TGY3 1603 aaPredicted RBP17.77■□□□□ 0.43
SMPD4-219ENST00000491128 IPO8O15397 1037 aaKnown RBP17.77■□□□□ 0.43
SMPD4-219ENST00000491128 ANXA1P04083 346 aa17.77■□□□□ 0.43
SMPD4-219ENST00000491128 IL2RBP14784 551 aa17.77■□□□□ 0.43
SMPD4-219ENST00000491128 ZCRB1Q8TBF4 217 aaKnown RBP17.77■□□□□ 0.43
SMPD4-219ENST00000491128 PCDHB15Q9Y5E8 787 aa17.77■□□□□ 0.43
SMPD4-219ENST00000491128 LMO7Q8WWI1 1683 aa17.76■□□□□ 0.43
SMPD4-219ENST00000491128 KDM6AO15550 1401 aaPredicted RBP17.76■□□□□ 0.43
SMPD4-219ENST00000491128 EIF4A1P60842 406 aaKnown RBP17.76■□□□□ 0.43
SMPD4-219ENST00000491128 CERKQ8TCT0 537 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms