RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 CARD14Q9BXL6 1004 aa6.95□□□□□ -1.3
PTCD3-216ENST00000487043 FKBPLQ9UIM3 349 aa6.95□□□□□ -1.3
PTCD3-216ENST00000487043 MAFBQ9Y5Q3 323 aaPredicted RBP6.95□□□□□ -1.3
PTCD3-216ENST00000487043 ZBBXA8MT70 800 aa6.94□□□□□ -1.3
PTCD3-216ENST00000487043 FBXO45P0C2W1 286 aa6.94□□□□□ -1.3
PTCD3-216ENST00000487043 EMILIN1Q9Y6C2 1016 aa6.94□□□□□ -1.3
PTCD3-216ENST00000487043 ATP9BO43861 1147 aa6.93□□□□□ -1.3
PTCD3-216ENST00000487043 BRD1O95696 1058 aa6.93□□□□□ -1.3
PTCD3-216ENST00000487043 SH3BP5LQ7L8J4 393 aa6.93□□□□□ -1.3
PTCD3-216ENST00000487043 CCDC116Q8IYX3 515 aa6.93□□□□□ -1.3
PTCD3-216ENST00000487043 TSEN34Q9BSV6 310 aaKnown RBP6.93□□□□□ -1.3
PTCD3-216ENST00000487043 C1QTNF2Q9BXJ5 285 aa6.93□□□□□ -1.3
PTCD3-216ENST00000487043 DNMT3LQ9UJW3 386 aa6.93□□□□□ -1.3
PTCD3-216ENST00000487043 MAP4K5Q9Y4K4 846 aa6.93□□□□□ -1.3
PTCD3-216ENST00000487043 SOS2Q07890 1332 aaPredicted RBP6.93□□□□□ -1.3
PTCD3-216ENST00000487043 ATG7O95352 703 aa6.92□□□□□ -1.3
PTCD3-216ENST00000487043 TTLL8A6PVC2 850 aa6.91□□□□□ -1.3
PTCD3-216ENST00000487043 PATL2C9JE40 543 aaKnown RBP6.91□□□□□ -1.3
PTCD3-216ENST00000487043 PIK3CDO00329 1044 aa6.91□□□□□ -1.3
PTCD3-216ENST00000487043 KCNA1Q09470 495 aa6.91□□□□□ -1.3
PTCD3-216ENST00000487043 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.91□□□□□ -1.3
PTCD3-216ENST00000487043 TRMT44Q8IYL2 757 aaKnown RBP6.91□□□□□ -1.3
PTCD3-216ENST00000487043 VRTNQ9H8Y1 702 aa6.91□□□□□ -1.3
PTCD3-216ENST00000487043 FIGNL2A6NMB9 653 aa6.9□□□□□ -1.3
PTCD3-216ENST00000487043 MFAP1P55081 439 aaKnown RBP6.9□□□□□ -1.3
PTCD3-216ENST00000487043 GPKOWQ92917 476 aaPredicted RBP eCLIP6.9□□□□□ -1.37e-7■■■□□ 16.8
PTCD3-216ENST00000487043 PGPEP1Q9NXJ5 209 aa6.9□□□□□ -1.3
PTCD3-216ENST00000487043 SKIP12755 728 aa6.89□□□□□ -1.31
PTCD3-216ENST00000487043 ERFEQ4G0M1 354 aa6.89□□□□□ -1.31
PTCD3-216ENST00000487043 PPP1R26Q5T8A7 1209 aaPredicted RBP6.89□□□□□ -1.31
PTCD3-216ENST00000487043 ZC3H4Q9UPT8 1303 aaKnown RBP6.89□□□□□ -1.31
PTCD3-216ENST00000487043 TMEM88BA6NKF7 163 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 PTSQ03393 145 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 CBLBQ13191 982 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 KANK4Q5T7N3 995 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-216ENST00000487043 SLC10A4Q96EP9 437 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 CNTNAP3BQ96NU0 1288 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 OCSTAMPQ9BR26 566 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 ARHGAP9Q9BRR9 750 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 CNTNAP3Q9BZ76 1288 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 MTMR7Q9Y216 660 aa6.88□□□□□ -1.31
PTCD3-216ENST00000487043 USP17L3A6NCW0 530 aa6.87□□□□□ -1.31
PTCD3-216ENST00000487043 USP17L4A6NCW7 530 aa6.87□□□□□ -1.31
PTCD3-216ENST00000487043 USP17L2Q6R6M4 530 aa6.87□□□□□ -1.31
PTCD3-216ENST00000487043 USP17L1Q7RTZ2 530 aa6.87□□□□□ -1.31
PTCD3-216ENST00000487043 ZBTB33Q86T24 672 aa6.87□□□□□ -1.31
PTCD3-216ENST00000487043 DEPDC4Q8N2C3 294 aa6.87□□□□□ -1.31
PTCD3-216ENST00000487043 USP17L5A8MUK1 530 aa6.86□□□□□ -1.31
PTCD3-216ENST00000487043 PTK2Q05397 1052 aa6.86□□□□□ -1.31
PTCD3-216ENST00000487043 PDXDC2PQ6P474 469 aa6.86□□□□□ -1.31
PTCD3-216ENST00000487043 GPR161Q8N6U8 529 aaKnown RBP6.86□□□□□ -1.31
PTCD3-216ENST00000487043 NFATC2IPQ8NCF5 419 aa6.86□□□□□ -1.31
PTCD3-216ENST00000487043 RGS22Q8NE09 1264 aa6.86□□□□□ -1.31
PTCD3-216ENST00000487043 KCTD15Q96SI1 283 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-216ENST00000487043 PCDHB9Q9Y5E1 797 aa6.86□□□□□ -1.31
PTCD3-216ENST00000487043 IVNS1ABPQ9Y6Y0 642 aa6.86□□□□□ -1.31
PTCD3-216ENST00000487043 KCNMA1Q12791 1236 aa6.85□□□□□ -1.31
PTCD3-216ENST00000487043 SLFNL1Q499Z3 407 aa6.85□□□□□ -1.31
PTCD3-216ENST00000487043 CEP126Q9P2H0 1117 aa6.85□□□□□ -1.31
PTCD3-216ENST00000487043 CDV3Q9UKY7 258 aaKnown RBP6.85□□□□□ -1.31
PTCD3-216ENST00000487043 NOVA2Q9UNW9 492 aaKnown RBP6.85□□□□□ -1.31
PTCD3-216ENST00000487043 SPINT1O43278 529 aa6.84□□□□□ -1.31
PTCD3-216ENST00000487043 KRT76Q01546 638 aa6.84□□□□□ -1.31
PTCD3-216ENST00000487043 DHX9Q08211 1270 aaKnown RBP6.84□□□□□ -1.31
PTCD3-216ENST00000487043 ELOAQ14241 798 aaKnown RBP6.84□□□□□ -1.31
PTCD3-216ENST00000487043 Q6ZVU0 165 aa6.84□□□□□ -1.31
PTCD3-216ENST00000487043 RNF135Q8IUD6 432 aa6.84□□□□□ -1.31
PTCD3-216ENST00000487043 CCDC155Q8N6L0 562 aa6.84□□□□□ -1.31
PTCD3-216ENST00000487043 STK32AQ8WU08 396 aa6.84□□□□□ -1.31
PTCD3-216ENST00000487043 COL25A1Q9BXS0 654 aaPredicted RBP6.84□□□□□ -1.31
PTCD3-216ENST00000487043 ZMIZ1Q9ULJ6 1067 aa6.84□□□□□ -1.31
PTCD3-216ENST00000487043 GPSM3Q9Y4H4 160 aa6.84□□□□□ -1.31
PTCD3-216ENST00000487043 CDC14CA4D256 554 aa6.83□□□□□ -1.32
PTCD3-216ENST00000487043 RELBQ01201 579 aa6.83□□□□□ -1.32
PTCD3-216ENST00000487043 TMEM164Q5U3C3 297 aa6.83□□□□□ -1.32
PTCD3-216ENST00000487043 FOXD4L5Q5VV16 416 aaPredicted RBP6.83□□□□□ -1.32
PTCD3-216ENST00000487043 PLEKHM2Q8IWE5 1019 aa6.83□□□□□ -1.32
PTCD3-216ENST00000487043 FOXD4L4Q8WXT5 416 aaPredicted RBP6.83□□□□□ -1.32
PTCD3-216ENST00000487043 AGBL1Q96MI9 1066 aa6.83□□□□□ -1.32
PTCD3-216ENST00000487043 MKRN1Q9UHC7 482 aaKnown RBP6.83□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L15C9J2P7 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L10C9JJH3 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L13C9JLJ4 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L12C9JPN9 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L11C9JVI0 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L21D6R901 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L18D6R9N7 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L22D6RA61 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L17D6RBQ6 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L19D6RCP7 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L20D6RJB6 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 RNF225M0QZC1 329 aaPredicted RBP6.82□□□□□ -1.32
PTCD3-216ENST00000487043 USP17L24Q0WX57 530 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 NCOA4Q13772 614 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 LARP1Q6PKG0 1096 aaKnown RBP6.82□□□□□ -1.32
PTCD3-216ENST00000487043 TMEM151AQ8N4L1 468 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 PLPP7Q8NBV4 271 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 ADAM32Q8TC27 787 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 ZNF592Q92610 1267 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 POLMQ9NP87 494 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms