RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 NECTIN2Q92692 538 aa17.8■□□□□ 0.44
COL5A1-201ENST00000371817 NGDNQ8NEJ9 315 aaKnown RBP17.8■□□□□ 0.44
COL5A1-201ENST00000371817 NSRP1Q9H0G5 558 aaKnown RBP17.79■□□□□ 0.44
COL5A1-201ENST00000371817 ANO10Q9NW15 660 aa17.79■□□□□ 0.44
COL5A1-201ENST00000371817 NAA25Q14CX7 972 aa17.79■□□□□ 0.44
COL5A1-201ENST00000371817 NEUROD6Q96NK8 337 aa17.79■□□□□ 0.44
COL5A1-201ENST00000371817 TRMT1Q9NXH9 659 aaKnown RBP17.79■□□□□ 0.44
COL5A1-201ENST00000371817 HOOK3Q86VS8 718 aa17.79■□□□□ 0.44
COL5A1-201ENST00000371817 HYPKQ9NX55 129 aa17.79■□□□□ 0.44
COL5A1-201ENST00000371817 GNAI1P63096 354 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 CAMK4Q16566 473 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 SCLT1Q96NL6 688 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 NACADO15069 1562 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 AKNAQ7Z591 1439 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 SUDS3Q9H7L9 328 aaPredicted RBP17.78■□□□□ 0.44
COL5A1-201ENST00000371817 UACAQ9BZF9 1416 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 EBAG9O00559 213 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 SLC3A2P08195 630 aaKnown RBP17.78■□□□□ 0.44
COL5A1-201ENST00000371817 OTUD6BQ8N6M0 293 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 MIPOL1Q8TD10 442 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 COG3Q96JB2 828 aa17.78■□□□□ 0.44
COL5A1-201ENST00000371817 USO1O60763 962 aaKnown RBP17.77■□□□□ 0.44
COL5A1-201ENST00000371817 CAPN2P17655 700 aa17.77■□□□□ 0.44
COL5A1-201ENST00000371817 MAATS1Q7Z4T9 603 aa17.77■□□□□ 0.44
COL5A1-201ENST00000371817 VPS36Q86VN1 386 aa17.77■□□□□ 0.44
COL5A1-201ENST00000371817 CNTLNQ9NXG0 1405 aa17.77■□□□□ 0.44
COL5A1-201ENST00000371817 C10orf67Q8IYJ2 551 aa17.77■□□□□ 0.44
COL5A1-201ENST00000371817 SMAP1Q8IYB5 467 aaPredicted RBP17.77■□□□□ 0.44
COL5A1-201ENST00000371817 CDKL5O76039 1030 aa17.77■□□□□ 0.44
COL5A1-201ENST00000371817 FYB1O15117 783 aa17.77■□□□□ 0.43
COL5A1-201ENST00000371817 STK3Q13188 491 aa17.77■□□□□ 0.43
COL5A1-201ENST00000371817 CCDC171Q6TFL3 1326 aa17.77■□□□□ 0.43
COL5A1-201ENST00000371817 CCDC144AA2RUR9 1427 aa17.77■□□□□ 0.43
COL5A1-201ENST00000371817 FSD2A1L4K1 749 aa17.76■□□□□ 0.43
COL5A1-201ENST00000371817 NOL3O60936 208 aaKnown RBP17.76■□□□□ 0.43
COL5A1-201ENST00000371817 CCDC97Q96F63 343 aaPredicted RBP17.76■□□□□ 0.43
COL5A1-201ENST00000371817 ZHX3Q9H4I2 956 aa17.76■□□□□ 0.43
COL5A1-201ENST00000371817 PDE3AQ14432 1141 aa17.76■□□□□ 0.43
COL5A1-201ENST00000371817 PPP6R1Q9UPN7 881 aa17.76■□□□□ 0.43
COL5A1-201ENST00000371817 A0A1B0GUL7 405 aa17.75■□□□□ 0.43
COL5A1-201ENST00000371817 BRD4O60885 1362 aaPredicted RBP17.75■□□□□ 0.43
COL5A1-201ENST00000371817 BAZ1AQ9NRL2 1556 aaPredicted RBP17.75■□□□□ 0.43
COL5A1-201ENST00000371817 ALS2CR12Q96Q35 445 aa17.75■□□□□ 0.43
COL5A1-201ENST00000371817 ADCY5O95622 1261 aa17.75■□□□□ 0.43
COL5A1-201ENST00000371817 LIG1P18858 919 aa17.75■□□□□ 0.43
COL5A1-201ENST00000371817 DHX57Q6P158 1386 aaKnown RBP17.75■□□□□ 0.43
COL5A1-201ENST00000371817 KIF20AO95235 890 aa17.75■□□□□ 0.43
COL5A1-201ENST00000371817 CCDC121Q6ZUS5 278 aa17.75■□□□□ 0.43
COL5A1-201ENST00000371817 NUP133Q8WUM0 1156 aa17.75■□□□□ 0.43
COL5A1-201ENST00000371817 TBC1D2BQ9UPU7 963 aa17.75■□□□□ 0.43
COL5A1-201ENST00000371817 EVC2Q86UK5 1308 aa17.74■□□□□ 0.43
COL5A1-201ENST00000371817 POTEJP0CG39 1038 aa17.74■□□□□ 0.43
COL5A1-201ENST00000371817 BMP2KQ9NSY1 1161 aaPredicted RBP17.74■□□□□ 0.43
COL5A1-201ENST00000371817 NOL7Q9UMY1 257 aaKnown RBP17.74■□□□□ 0.43
COL5A1-201ENST00000371817 CTAGE5O15320 804 aa17.74■□□□□ 0.43
COL5A1-201ENST00000371817 ZWINTO95229 277 aa17.74■□□□□ 0.43
COL5A1-201ENST00000371817 PAXIP1Q6ZW49 1069 aaPredicted RBP17.74■□□□□ 0.43
COL5A1-201ENST00000371817 DIAPH1O60610 1272 aaKnown RBP17.74■□□□□ 0.43
COL5A1-201ENST00000371817 ARID4AP29374 1257 aaPredicted RBP17.74■□□□□ 0.43
COL5A1-201ENST00000371817 TRHP20396 242 aaPredicted RBP17.74■□□□□ 0.43
COL5A1-201ENST00000371817 IKQ13123 557 aaPredicted RBP17.74■□□□□ 0.43
COL5A1-201ENST00000371817 SRRTQ9BXP5 876 aaKnown RBP17.73■□□□□ 0.43
COL5A1-201ENST00000371817 NUP88Q99567 741 aaPredicted RBP17.73■□□□□ 0.43
COL5A1-201ENST00000371817 SERPINA10Q9UK55 444 aa17.73■□□□□ 0.43
COL5A1-201ENST00000371817 MCM6Q14566 821 aa17.73■□□□□ 0.43
COL5A1-201ENST00000371817 FKBP15Q5T1M5 1219 aa17.73■□□□□ 0.43
COL5A1-201ENST00000371817 ATP2C2O75185 946 aa17.73■□□□□ 0.43
COL5A1-201ENST00000371817 DNAJC21Q5F1R6 531 aaKnown RBP17.73■□□□□ 0.43
COL5A1-201ENST00000371817 USP25Q9UHP3 1055 aa17.72■□□□□ 0.43
COL5A1-201ENST00000371817 PPP1R12BO60237 982 aaPredicted RBP17.72■□□□□ 0.43
COL5A1-201ENST00000371817 RNF168Q8IYW5 571 aaPredicted RBP17.72■□□□□ 0.43
COL5A1-201ENST00000371817 ZSCAN31Q96LW9 406 aaPredicted RBP17.72■□□□□ 0.43
COL5A1-201ENST00000371817 PLEKHH1Q9ULM0 1364 aa17.72■□□□□ 0.43
COL5A1-201ENST00000371817 KANK4Q5T7N3 995 aaPredicted RBP17.72■□□□□ 0.43
COL5A1-201ENST00000371817 CEP131Q9UPN4 1083 aa17.72■□□□□ 0.43
COL5A1-201ENST00000371817 PUS7Q96PZ0 661 aaKnown RBP17.71■□□□□ 0.43
COL5A1-201ENST00000371817 GNAI3P08754 354 aa17.71■□□□□ 0.43
COL5A1-201ENST00000371817 SOGA3Q5TF21 947 aa17.71■□□□□ 0.43
COL5A1-201ENST00000371817 CACNA2D4Q7Z3S7 1137 aa17.71■□□□□ 0.43
COL5A1-201ENST00000371817 TCHPQ9BT92 498 aa17.71■□□□□ 0.43
COL5A1-201ENST00000371817 MTMR7Q9Y216 660 aa17.71■□□□□ 0.43
COL5A1-201ENST00000371817 GGT6Q6P531 493 aa17.71■□□□□ 0.43
COL5A1-201ENST00000371817 FERP16591 822 aa17.71■□□□□ 0.43
COL5A1-201ENST00000371817 FAM184BQ9ULE4 1060 aa17.71■□□□□ 0.43
COL5A1-201ENST00000371817 NEBLO76041 1014 aa17.71■□□□□ 0.42
COL5A1-201ENST00000371817 SAMD1Q6SPF0 538 aaPredicted RBP17.71■□□□□ 0.42
COL5A1-201ENST00000371817 HOMER2Q9NSB8 354 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 MSH5O43196 834 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 KIF4AO95239 1232 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 SCAND2PQ9GZW5 306 aaPredicted RBP17.7■□□□□ 0.42
COL5A1-201ENST00000371817 TSPYL4Q9UJ04 414 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 EHBP1Q8NDI1 1231 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 BLOC1S2Q6QNY1 142 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 SRCIN1Q9C0H9 1055 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC18Q5T9S5 1454 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC155Q8N6L0 562 aa17.7■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC69A6NI79 296 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 ATRIPQ8WXE1 791 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 SURF6O75683 361 aaKnown RBP17.69■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC158Q5M9N0 1113 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms