RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DDX17Q92841 729 aaKnown RBP8.73□□□□□ -1.01
VPS13A-202ENST00000357409 ZBTB21Q9ULJ3 1066 aa8.73□□□□□ -1.01
VPS13A-202ENST00000357409 SART3Q15020 963 aaKnown RBP8.73□□□□□ -1.01
VPS13A-202ENST00000357409 RFC4P35249 363 aa8.73□□□□□ -1.01
VPS13A-202ENST00000357409 KRT28Q7Z3Y7 464 aa8.73□□□□□ -1.01
VPS13A-202ENST00000357409 ZNF354CQ86Y25 554 aa8.73□□□□□ -1.01
VPS13A-202ENST00000357409 CEP126Q9P2H0 1117 aa8.73□□□□□ -1.01
VPS13A-202ENST00000357409 ZNF444Q8N0Y2 327 aaPredicted RBP8.73□□□□□ -1.01
VPS13A-202ENST00000357409 AQRO60306 1485 aaKnown RBP eCLIP8.73□□□□□ -1.016e-9■■■■■ 67.2
VPS13A-202ENST00000357409 THEMISQ8N1K5 641 aaPredicted RBP8.73□□□□□ -1.01
VPS13A-202ENST00000357409 IGHMBP2P38935 993 aaKnown RBP8.72□□□□□ -1.01
VPS13A-202ENST00000357409 MAP7D2Q96T17 732 aa8.72□□□□□ -1.01
VPS13A-202ENST00000357409 CCDC113Q9H0I3 377 aa8.72□□□□□ -1.01
VPS13A-202ENST00000357409 PLS1Q14651 629 aa8.72□□□□□ -1.01
VPS13A-202ENST00000357409 CCDC181Q5TID7 509 aa8.72□□□□□ -1.01
VPS13A-202ENST00000357409 TRERF1Q96PN7 1200 aa8.72□□□□□ -1.01
VPS13A-202ENST00000357409 TFIP11Q9UBB9 837 aaKnown RBP8.72□□□□□ -1.01
VPS13A-202ENST00000357409 LRRFIP2Q9Y608 721 aaKnown RBP8.72□□□□□ -1.01
VPS13A-202ENST00000357409 HOOK1Q9UJC3 728 aaKnown RBP8.72□□□□□ -1.01
VPS13A-202ENST00000357409 ATP2B3Q16720 1220 aa8.72□□□□□ -1.01
VPS13A-202ENST00000357409 NUDT16Q96DE0 195 aaKnown RBP8.72□□□□□ -1.01
VPS13A-202ENST00000357409 SAMM50Q9Y512 469 aa8.72□□□□□ -1.01
VPS13A-202ENST00000357409 EXOC5O00471 708 aa8.72□□□□□ -1.01
VPS13A-202ENST00000357409 BCCIPQ9P287 314 aaKnown RBP eCLIP8.72□□□□□ -1.01
VPS13A-202ENST00000357409 PPP2R1AP30153 589 aa8.71□□□□□ -1.01
VPS13A-202ENST00000357409 GAS2L2Q8NHY3 880 aa8.71□□□□□ -1.01
VPS13A-202ENST00000357409 CHMP5Q9NZZ3 219 aa8.71□□□□□ -1.01
VPS13A-202ENST00000357409 MACROD2A1Z1Q3 448 aa8.71□□□□□ -1.01
VPS13A-202ENST00000357409 IFIT1P09914 478 aaKnown RBP8.71□□□□□ -1.01
VPS13A-202ENST00000357409 MAP3K9P80192 1104 aa8.71□□□□□ -1.01
VPS13A-202ENST00000357409 ZYXQ15942 572 aaKnown RBP8.71□□□□□ -1.01
VPS13A-202ENST00000357409 DZIP1Q86YF9 867 aaKnown RBP8.71□□□□□ -1.01
VPS13A-202ENST00000357409 FNBP4Q8N3X1 1017 aaPredicted RBP8.71□□□□□ -1.01
VPS13A-202ENST00000357409 CHST3Q7LGC8 479 aa8.71□□□□□ -1.01
VPS13A-202ENST00000357409 RGS22Q8NE09 1264 aa8.71□□□□□ -1.01
VPS13A-202ENST00000357409 RPGRQ92834 1020 aaKnown RBP8.71□□□□□ -1.01
VPS13A-202ENST00000357409 PUS7Q96PZ0 661 aaKnown RBP8.71□□□□□ -1.01
VPS13A-202ENST00000357409 LRRC2Q9BYS8 371 aa8.71□□□□□ -1.01
VPS13A-202ENST00000357409 BIN2Q9UBW5 565 aaPredicted RBP8.71□□□□□ -1.01
VPS13A-202ENST00000357409 UPF3BQ9BZI7 483 aaKnown RBP8.71□□□□□ -1.01
VPS13A-202ENST00000357409 RSPH4AQ5TD94 716 aa8.71□□□□□ -1.02
VPS13A-202ENST00000357409 GPIHBP1Q8IV16 184 aa8.71□□□□□ -1.02
VPS13A-202ENST00000357409 ATP6V1DQ9Y5K8 247 aa8.71□□□□□ -1.02
VPS13A-202ENST00000357409 LRRCC1Q9C099 1032 aa8.71□□□□□ -1.02
VPS13A-202ENST00000357409 FMN1Q68DA7 1419 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 DDX11L8A8MPP1 907 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 SLC3A2P08195 630 aaKnown RBP8.7□□□□□ -1.02
VPS13A-202ENST00000357409 LARP1BQ659C4 914 aaKnown RBP8.7□□□□□ -1.02
VPS13A-202ENST00000357409 VEZTQ9HBM0 779 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 RB1CC1Q8TDY2 1594 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 DRC1Q96MC2 740 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 FAM182BQ5T319 152 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 PUF60Q9UHX1 559 aaKnown RBP8.7□□□□□ -1.02
VPS13A-202ENST00000357409 SEPT7Q16181 437 aaKnown RBP8.7□□□□□ -1.02
VPS13A-202ENST00000357409 AIDAQ96BJ3 306 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 TRAK2O60296 914 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 LRRC59Q96AG4 307 aaKnown RBP8.7□□□□□ -1.02
VPS13A-202ENST00000357409 UBAC1Q9BSL1 405 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 SRCIN1Q9C0H9 1055 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 ZRANB1Q9UGI0 708 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 TCEANC2Q96MN5 208 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 EMILIN1Q9Y6C2 1016 aa8.7□□□□□ -1.02
VPS13A-202ENST00000357409 GNL3LQ9NVN8 582 aaKnown RBP8.7□□□□□ -1.02
VPS13A-202ENST00000357409 SORBS3O60504 671 aa8.69□□□□□ -1.02
VPS13A-202ENST00000357409 AXDND1Q5T1B0 1012 aaPredicted RBP8.69□□□□□ -1.02
VPS13A-202ENST00000357409 SCAPERQ9BY12 1400 aa8.69□□□□□ -1.02
VPS13A-202ENST00000357409 STARD3NLO95772 234 aa8.69□□□□□ -1.02
VPS13A-202ENST00000357409 AMOTL2Q9Y2J4 779 aa8.69□□□□□ -1.02
VPS13A-202ENST00000357409 SETQ01105 290 aaPredicted RBP8.69□□□□□ -1.02
VPS13A-202ENST00000357409 C16orf71Q8IYS4 520 aaPredicted RBP8.69□□□□□ -1.02
VPS13A-202ENST00000357409 USP8P40818 1118 aa8.69□□□□□ -1.02
VPS13A-202ENST00000357409 HSP90AB4PQ58FF6 505 aa8.69□□□□□ -1.02
VPS13A-202ENST00000357409 CTNNBL1Q8WYA6 563 aaPredicted RBP8.69□□□□□ -1.02
VPS13A-202ENST00000357409 FILIP1LQ4L180 1135 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 KIF7Q2M1P5 1343 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 BIN1O00499 593 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 NBPF8Q3BBV2 869 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 CAVIN4Q5BKX8 364 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 LDHAL6AQ6ZMR3 332 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 ERC1Q8IUD2 1116 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 FEZ1Q99689 392 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 NCKAP5LQ9HCH0 1330 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 PSMA5P28066 241 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 IL27Q8NEV9 243 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 TMOD2Q9NZR1 351 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-202ENST00000357409 NLRP5P59047 1200 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.68□□□□□ -1.022e-6■■■□□ 18.5
VPS13A-202ENST00000357409 PKD2L1Q9P0L9 805 aa8.68□□□□□ -1.02
VPS13A-202ENST00000357409 RAPGEF2Q9Y4G8 1499 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 A0A087WZG4 1122 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 TXLNAP40222 546 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 TMEM57Q8N5G2 664 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 PLIN2Q99541 437 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 CDC45O75419 566 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 RXRAP19793 462 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 DUSP27Q5VZP5 1158 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 GOPCQ9HD26 462 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 MAEAQ7L5Y9 396 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 KINO60870 393 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms