RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LONRF1Q17RB8 773 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 SPANXN3Q5MJ09 141 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 TPRG1LQ5T0D9 272 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 ZNF648Q5T619 568 aaPredicted RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 KIAA0930Q6ICG6 404 aaPredicted RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 MACC1Q6ZN28 852 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 CEP128Q6ZU80 1094 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 MARK2Q7KZI7 788 aaKnown RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 RD3Q7Z3Z2 195 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 CCNJLQ8IV13 435 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 PALM2Q8IXS6 379 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 GSPT2Q8IYD1 628 aaKnown RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 SLC22A18ASQ8N1D0 253 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 OR4L1Q8NH43 312 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 BTN2A2Q8WVV5 523 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 TTC25Q96NG3 672 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 FCRL3Q96P31 734 aaPredicted RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 VPS35Q96QK1 796 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 CATSPERZQ9NTU4 200 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 C20orf96Q9NUD7 363 aaPredicted RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 TEX264Q9Y6I9 313 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 GOLGA8KD6RF30 607 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 GOLGA8TH3BQL2 631 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 SCAMP1O15126 338 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 MSH3P20585 1137 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 PSMA3P25788 255 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 PMLP29590 882 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 FOXN2P32314 431 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 MAGEA4P43358 317 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 IRX4P78413 519 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 GTF2H3Q13889 308 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 SF3A2Q15428 464 aaKnown RBP14.83□□□□□ -0.04
NUP54-213ENST00000513352 KIF19Q2TAC6 998 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 GPR33Q49SQ1 333 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 ZNF542PQ5EBM4 170 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 LDLRAP1Q5SW96 308 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 GPRC6AQ5T6X5 926 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 PSAPL1Q6NUJ1 521 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 SLC23A3Q6PIS1 610 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 UNC5AQ6ZN44 842 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 TMEM135Q86UB9 458 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 PARGQ86W56 976 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 SPATS2Q86XZ4 545 aaKnown RBP14.83□□□□□ -0.04
NUP54-213ENST00000513352 HID1Q8IV36 788 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 OR56A4Q8NGH8 313 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 RUBCNQ92622 972 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 DCUN1D1Q96GG9 259 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 C9orf72Q96LT7 481 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 TTC1Q99614 292 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 WDR83Q9BRX9 315 aaKnown RBP14.83□□□□□ -0.04
NUP54-213ENST00000513352 ZCCHC2Q9C0B9 1178 aaKnown RBP14.83□□□□□ -0.04
NUP54-213ENST00000513352 TSPYL1Q9H0U9 437 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 OR2AG1Q9H205 316 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 ANKZF1Q9H8Y5 726 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 CAPN10Q9HC96 672 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 PPANQ9NQ55 473 aaKnown RBP14.83□□□□□ -0.04
NUP54-213ENST00000513352 DNAJC28Q9NX36 388 aa14.83□□□□□ -0.04
NUP54-213ENST00000513352 CNOT6Q9ULM6 557 aaKnown RBP14.83□□□□□ -0.04
NUP54-213ENST00000513352 OAS3Q9Y6K5 1087 aaKnown RBP14.83□□□□□ -0.04
NUP54-213ENST00000513352 SPTY2D1-AS1A0A0U1RR47 76 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 ZCWPW2A0A1B0GU75 182 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 TMEM202A6NGA9 273 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 PROB1E7EW31 1015 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 CD3EAPO15446 510 aaKnown RBP14.82□□□□□ -0.04
NUP54-213ENST00000513352 HOXC4P09017 264 aaPredicted RBP14.82□□□□□ -0.04
NUP54-213ENST00000513352 CA5AP35218 305 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 POLD2P49005 469 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 SRP54P61011 504 aaKnown RBP14.82□□□□□ -0.04
NUP54-213ENST00000513352 PPARDQ03181 441 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 FZD2Q14332 565 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 TCEA2Q15560 299 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 ERCC6LQ2NKX8 1250 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 AARS2Q5JTZ9 985 aaKnown RBP14.82□□□□□ -0.04
NUP54-213ENST00000513352 PLA2G2CQ5R387 149 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 PRAMEF14Q5SWL7 426 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 MRNIPQ6NTE8 343 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 DET1Q7L5Y6 550 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 ASCL5Q7RTU5 278 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 KCNMB4Q86W47 210 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 SERPINA9Q86WD7 417 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 PIANPQ8IYJ0 282 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 NXPE1Q8N323 547 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 DCLK2Q8N568 766 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 DTX3LQ8TDB6 740 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 OR1E3Q8WZA6 343 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 TSACCQ96A04 125 aaPredicted RBP14.82□□□□□ -0.04
NUP54-213ENST00000513352 PDXPQ96GD0 296 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 COX14Q96I36 57 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 COPS8Q99627 209 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 PHACTR1Q9C0D0 580 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 VPS37BQ9H9H4 285 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 CYP4F12Q9HCS2 524 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 FGF22Q9HCT0 170 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 MRPL40Q9NQ50 206 aaKnown RBP14.82□□□□□ -0.04
NUP54-213ENST00000513352 SEMA4GQ9NTN9 838 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 SMOXQ9NWM0 555 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 TMPRSS11EQ9UL52 423 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 FAM169AQ9Y6X4 670 aa14.82□□□□□ -0.04
NUP54-213ENST00000513352 PRSS38A1L453 326 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms