RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ODF3L2Q3SX64 289 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 CST9LP1Q5W188 147 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 NSUN5P2Q63ZY6 315 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 DHRS7BQ6IAN0 325 aaPredicted RBP7.37□□□□□ -1.23
NUP54-215ENST00000514313 TMEM211Q6ICI0 200 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 DLK2Q6UY11 383 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 CTU1Q7Z7A3 348 aaKnown RBP7.37□□□□□ -1.23
NUP54-215ENST00000514313 CCDC190Q86UF4 302 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 OR8H3Q8N146 312 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 GOT1L1Q8NHS2 421 aaPredicted RBP7.37□□□□□ -1.23
NUP54-215ENST00000514313 KIF18AQ8NI77 898 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 SIPA1Q96FS4 1042 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 GRAMD2BQ96HH9 432 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 CFAP57Q96MR6 1250 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 DDOQ99489 341 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 ISCUQ9H1K1 167 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 PPIL3Q9H2H8 161 aaKnown RBP7.37□□□□□ -1.23
NUP54-215ENST00000514313 MMP27Q9H306 513 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 SIRT3Q9NTG7 399 aaPredicted RBP7.37□□□□□ -1.23
NUP54-215ENST00000514313 TAS2R14Q9NYV8 317 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 HEY2Q9UBP5 337 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 TTC7AQ9ULT0 858 aaPredicted RBP7.37□□□□□ -1.23
NUP54-215ENST00000514313 CDC14AQ9UNH5 594 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 COX11Q9Y6N1 276 aa7.37□□□□□ -1.23
NUP54-215ENST00000514313 TMEM8BA6NDV4 472 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 PLPP2O43688 288 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 FSHBP01225 129 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 GH2P01242 217 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 PTAFRP25105 342 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 MATR3P43243 847 aaKnown RBP eCLIP7.36□□□□□ -1.23
NUP54-215ENST00000514313 TNNT3P45378 269 aaPredicted RBP7.36□□□□□ -1.23
NUP54-215ENST00000514313 ALDH7A1P49419 539 aaKnown RBP7.36□□□□□ -1.23
NUP54-215ENST00000514313 RAD23BP54727 409 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 EFNB3Q15768 340 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 SNAPC1Q16533 368 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 COLEC12Q5KU26 742 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 WASHC2DQ5SRD0 308 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 TRAT1Q6PIZ9 186 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 TRAPPC11Q7Z392 1133 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 PIP4P1Q86T03 277 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 CEP57Q86XR8 500 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 FOXRED2Q8IWF2 684 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 DSELQ8IZU8 1212 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 TTC30BQ8N4P2 665 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 AADATQ8N5Z0 425 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 GPATCH11Q8N954 259 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 PRSS3P2Q8NHM4 247 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 CFAP61Q8NHU2 1237 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 APBB2Q92870 758 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 COQ8BQ96D53 544 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 ZNF830Q96NB3 372 aaPredicted RBP7.36□□□□□ -1.23
NUP54-215ENST00000514313 SH3GL2Q99962 352 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 TRMOQ9BU70 441 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 GPR88Q9GZN0 384 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 FZD3Q9NPG1 666 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 CNGB3Q9NQW8 809 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 OLAHQ9NV23 265 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 HAO2Q9NYQ3 351 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 LARSQ9P2J5 1176 aaKnown RBP7.36□□□□□ -1.23
NUP54-215ENST00000514313 PCDHGA5Q9Y5G8 931 aa7.36□□□□□ -1.23
NUP54-215ENST00000514313 B4DGG1 531 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 HSPA12AO43301 675 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 CCR10P46092 362 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 BFSP1Q12934 665 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 GRIK2Q13002 908 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 TRAF1Q13077 416 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 GPR18Q14330 331 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 KRT33BQ14525 404 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 MYLK3Q32MK0 819 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 FAM98BQ52LJ0 330 aaKnown RBP7.35□□□□□ -1.23
NUP54-215ENST00000514313 TEX38Q6PEX7 206 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 SUSD1Q6UWL2 747 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 ZNF367Q7RTV3 350 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 BEST3Q8N1M1 668 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 C7orf57Q8NEG2 295 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 OR10S1Q8NGN2 331 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 LPAR1Q92633 364 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 DACH2Q96NX9 599 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 SYT17Q9BSW7 474 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 FAM234AQ9H0X4 552 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 KCNK15Q9H427 330 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 CATSPERBQ9H7T0 1116 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 KRCC1Q9NPI7 259 aaPredicted RBP7.35□□□□□ -1.23
NUP54-215ENST00000514313 TUBE1Q9UJT0 475 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 DBNLQ9UJU6 430 aaKnown RBP7.35□□□□□ -1.23
NUP54-215ENST00000514313 ACSL5Q9ULC5 683 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 SQORQ9Y6N5 450 aa7.35□□□□□ -1.23
NUP54-215ENST00000514313 FLT1P17948 1338 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 WDR33Q9C0J8 1336 aaKnown RBP7.34□□□□□ -1.23
NUP54-215ENST00000514313 CGB1A6NKQ9 187 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 EIF4E1BA6NMX2 242 aaKnown RBP7.34□□□□□ -1.23
NUP54-215ENST00000514313 MS4A18H0YCH9 400 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 ITM2AO43736 263 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 ZIC3O60481 467 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 TRUB2O95900 331 aaKnown RBP7.34□□□□□ -1.23
NUP54-215ENST00000514313 ARSBP15848 533 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 DNASE1P24855 282 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 GP5P40197 560 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 ME1P48163 572 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 ZP1P60852 638 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms