RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 GALK1P51570 392 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 STC1P52823 247 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 CSHL1Q14406 222 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 TECRLQ5HYJ1 363 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 AFTPHQ6ULP2 937 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 ZNF781Q8N8C0 355 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 KDM1BQ8NB78 822 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 NSL1Q96IY1 281 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 CPEB1Q9BZB8 566 aaKnown RBP22.53■■□□□ 1.2
CDX1-201ENST00000231656 UNKQ9C0B0 810 aaKnown RBP22.53■■□□□ 1.2
CDX1-201ENST00000231656 MTG2Q9H4K7 406 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 FAM96AQ9H5X1 160 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 GPAMQ9HCL2 828 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 CRYL1Q9Y2S2 319 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 PCDHB9Q9Y5E1 797 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 TCF20Q9UGU0 1960 aaKnown RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 HTRA2O43464 458 aaPredicted RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 CCDC22O60826 627 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 SOCS5O75159 536 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 LTA4HP09960 611 aaKnown RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 LPOP22079 712 aaPredicted RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 FDXRP22570 491 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 HNRNPH1P31943 449 aaKnown RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 SLC8A1P32418 973 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 RECQLP46063 649 aaPredicted RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 TIAL1Q01085 375 aaKnown RBP eCLIP22.52■■□□□ 1.2
CDX1-201ENST00000231656 TFF2Q03403 129 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 FAM83EQ2M2I3 478 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 FNDC3BQ53EP0 1204 aaKnown RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 TMEM207Q6UWW9 146 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 TTC30BQ8N4P2 665 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 ZNF366Q8N895 744 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 CHST14Q8NCH0 376 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 UCMAQ8WVF2 138 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 SCG3Q8WXD2 468 aaKnown RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 UTP4Q969X6 686 aaKnown RBP22.52■■□□□ 1.2
CDX1-201ENST00000231656 TUBGCP5Q96RT8 1024 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 CDH19Q9H159 772 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 ZDHHC6Q9H6R6 413 aa22.52■■□□□ 1.2
CDX1-201ENST00000231656 CAPN14A8MX76 684 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 WASH3PC4AMC7 463 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 PGLSO95336 258 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 PRSS56P0CW18 603 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 CCDC166P0CW27 439 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 SERPINA4P29622 427 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 CTHP32929 405 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 SLC26A3P40879 764 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 IDH3AP50213 366 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 RASSF2P50749 326 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 RAD51Q06609 339 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 RCN2Q14257 317 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 ZNF234Q14588 700 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 ARMC12Q5T9G4 340 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 AGAP9Q5VTM2 703 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 NUDT18Q6ZVK8 323 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 SDCCAG8Q86SQ7 713 aaPredicted RBP22.51■■□□□ 1.19
CDX1-201ENST00000231656 ANKRD49Q8WVL7 239 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 RILPQ96NA2 401 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 P2RY13Q9BPV8 354 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 INTS10Q9NVR2 710 aaKnown RBP22.51■■□□□ 1.19
CDX1-201ENST00000231656 ARMCX1Q9P291 453 aa22.51■■□□□ 1.19
CDX1-201ENST00000231656 ANTXRLA6NF34 631 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 SPECC1L-ADORA2AF8WAN1 911 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 SERPINA6P08185 405 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 BMP1P13497 986 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 IL9P15248 144 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 ABL2P42684 1182 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 SUOXP51687 545 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 TXNDC11Q6PKC3 985 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 PIM3Q86V86 326 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 TXNDC5Q8NBS9 432 aaKnown RBP22.5■■□□□ 1.19
CDX1-201ENST00000231656 DNASE1L2Q92874 299 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 MOCOSQ96EN8 888 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 HEBP1Q9NRV9 189 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 POLR3BQ9NW08 1133 aaPredicted RBP22.5■■□□□ 1.19
CDX1-201ENST00000231656 HCN2Q9UL51 889 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 CHRNGP07510 517 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 PTPN4P29074 926 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 NAGLUP54802 743 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 DNAJB13P59910 316 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 PFKPQ01813 784 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 PTPRRQ15256 657 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 TREML1Q86YW5 311 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 SUGP1Q8IWZ8 645 aaKnown RBP22.5■■□□□ 1.19
CDX1-201ENST00000231656 PARP9Q8IXQ6 854 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 PIH1D2Q8WWB5 315 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 AARSD1Q9BTE6 412 aaKnown RBP22.5■■□□□ 1.19
CDX1-201ENST00000231656 TMEM245Q9H330 911 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 ACSS2Q9NR19 701 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 HACD3Q9P035 362 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 THAP10Q9P2Z0 257 aaPredicted RBP22.5■■□□□ 1.19
CDX1-201ENST00000231656 FAM50BQ9Y247 325 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 RAP2CQ9Y3L5 183 aa22.5■■□□□ 1.19
CDX1-201ENST00000231656 MTF2Q9Y483 593 aaPredicted RBP22.5■■□□□ 1.19
CDX1-201ENST00000231656 ATG2BQ96BY7 2078 aa22.49■■□□□ 1.19
CDX1-201ENST00000231656 HLA-EP13747 358 aa22.49■■□□□ 1.19
CDX1-201ENST00000231656 CALB2P22676 271 aa22.49■■□□□ 1.19
CDX1-201ENST00000231656 ATP5F1P24539 256 aaPredicted RBP22.49■■□□□ 1.19
CDX1-201ENST00000231656 ASPHQ12797 758 aa22.49■■□□□ 1.19
CDX1-201ENST00000231656 ACAP2Q15057 778 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms