RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 MTSS1LQ765P7 747 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 OR6Y1Q8NGX8 325 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 PLEKHG4BQ96PX9 1271 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 TRMT61BQ9BVS5 477 aaKnown RBP18.04■□□□□ 0.48
VIM-201ENST00000224237 SYTL2Q9HCH5 934 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 TRBV5-4A0A0C4DH59 114 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 OR1I1O60431 355 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 PRNPP04156 253 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 SEMG2Q02383 582 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 TRPM8Q7Z2W7 1104 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 SERPINA9Q86WD7 417 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 CHFRQ96EP1 664 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 NECTIN4Q96NY8 510 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 UNKQ9C0B0 810 aaKnown RBP18.03■□□□□ 0.48
VIM-201ENST00000224237 C20orf27Q9GZN8 174 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 FAM50BQ9Y247 325 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 MED16Q9Y2X0 877 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 PCDHB1Q9Y5F3 818 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 CCT8L1PA6NM43 557 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 TMEM114B3SHH9 223 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 PRMT5O14744 637 aaPredicted RBP18.03■□□□□ 0.48
VIM-201ENST00000224237 VPS26AO75436 327 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 C1SP09871 688 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 ZNF7P17097 686 aaPredicted RBP18.03■□□□□ 0.48
VIM-201ENST00000224237 ACRV1P26436 265 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 VIPR1P32241 457 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 ASPHQ12797 758 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 ZNF234Q14588 700 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 ITPRIPL2Q3MIP1 535 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 LRRC73Q5JTD7 316 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 CTSL3PQ5NE16 218 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 CCDC121Q6ZUS5 278 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 SPNS2Q8IVW8 549 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 RBFAQ8N0V3 343 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 SMRP1Q8NCR6 262 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 GPR26Q8NDV2 337 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 PPP4R1Q8TF05 950 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 KCNJ9Q92806 393 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 P2RY12Q9H244 342 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 TMEM245Q9H330 911 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 PKD2L2Q9NZM6 624 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 CRLS1Q9UJA2 301 aa18.03■□□□□ 0.48
VIM-201ENST00000224237 OAS3Q9Y6K5 1087 aaKnown RBP18.03■□□□□ 0.48
VIM-201ENST00000224237 GOLGA8CPA6NN73 597 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 AGAP14A8MT82 685 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 H3BQ06 376 aaPredicted RBP18.02■□□□□ 0.48
VIM-201ENST00000224237 TIMP2P16035 220 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 XPAP23025 273 aaPredicted RBP18.02■□□□□ 0.48
VIM-201ENST00000224237 RPS3P23396 243 aaKnown RBP eCLIP18.02■□□□□ 0.485e-7■□□□□ 10.4
VIM-201ENST00000224237 SPINT3P49223 89 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 ABCE1P61221 599 aaKnown RBP18.02■□□□□ 0.48
VIM-201ENST00000224237 ELAVL3Q14576 367 aaKnown RBP18.02■□□□□ 0.48
VIM-201ENST00000224237 COL19A1Q14993 1142 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 CHRNA6Q15825 494 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 SERPINA13PQ6UXR4 307 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 NUDT18Q6ZVK8 323 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 OR8D1Q8WZ84 308 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 RMDN2Q96LZ7 410 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 PCDH12Q9NPG4 1184 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 DCTN4Q9UJW0 460 aa18.02■□□□□ 0.48
VIM-201ENST00000224237 COLQQ9Y215 455 aaPredicted RBP18.02■□□□□ 0.48
VIM-201ENST00000224237 C16orf96A6NNT2 1141 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 E5RI56 91 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 ARNTLO00327 626 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 SOX1O00570 391 aaPredicted RBP18.01■□□□□ 0.47
VIM-201ENST00000224237 ITM2AO43736 263 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 KAT7O95251 611 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 HLA-EP13747 358 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 CD1DP15813 335 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 TFEBP19484 476 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 GRIA2P42262 883 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 SKIV2L2P42285 1042 aaKnown RBP18.01■□□□□ 0.47
VIM-201ENST00000224237 MAGEA9P43362 315 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 C9orf64Q5T6V5 341 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 TTC7BQ86TV6 843 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 RFWD2Q8NHY2 731 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 CCT6BQ92526 530 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 CCDC126Q96EE4 140 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 GPR21Q99679 349 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 SIKE1Q9BRV8 207 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 CLPBQ9H078 707 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 KDM4CQ9H3R0 1056 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 ZNF395Q9H8N7 513 aaPredicted RBP18.01■□□□□ 0.47
VIM-201ENST00000224237 ZDHHC4Q9NPG8 344 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 EPS15L1Q9UBC2 864 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 MTF2Q9Y483 593 aaPredicted RBP18.01■□□□□ 0.47
VIM-201ENST00000224237 TMEM265A0A087WTH1 108 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 A0A0G2JND7 137 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 KPNA3O00505 521 aaPredicted RBP18.01■□□□□ 0.47
VIM-201ENST00000224237 DLX3O60479 287 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 ATP5F1P24539 256 aaPredicted RBP18.01■□□□□ 0.47
VIM-201ENST00000224237 PFKPQ01813 784 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 UGT3A1Q6NUS8 523 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 ERAP2Q6P179 960 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 NAPRTQ6XQN6 538 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 ISCA2Q86U28 154 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 TMIEQ8NEW7 156 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 PIWIL2Q8TC59 973 aaKnown RBP18.01■□□□□ 0.47
VIM-201ENST00000224237 FAM136AQ96C01 138 aa18.01■□□□□ 0.47
VIM-201ENST00000224237 ABCF3Q9NUQ8 709 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms