RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 Q96MT0 163 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 GPR20Q99678 358 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 TMCC2O75069 709 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 POMCP01189 267 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 THPOP40225 353 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 GPR15P49685 360 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 PRKCQQ04759 706 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 DAG1Q14118 895 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 AP5B1Q2VPB7 878 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 HSDL1Q3SXM5 330 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 ZNF280DQ6N043 979 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 RETSATQ6NUM9 610 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 ZCCHC8Q6NZY4 707 aaKnown RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 CARNMT1Q8N4J0 409 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 RFXANKO14593 260 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 CAPN1P07384 714 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 PABPC1P11940 636 aaKnown RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 ITGA2P17301 1181 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 NCBP2-AS2Q69YL0 99 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 TRPV3Q8NET8 790 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 FNDC8Q8TC99 324 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 NELL1Q92832 810 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 PDZD7Q9H5P4 517 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 ASB3Q9Y575 518 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 HTRA2O43464 458 aaPredicted RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 DLX3O60479 287 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 SCNN1AP37088 669 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 GNA12Q03113 381 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 NRG4Q8WWG1 115 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 ARMC7Q9H6L4 198 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 KAT8Q9H7Z6 458 aaKnown RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 MARCH2Q9P0N8 246 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 MYH3P11055 1940 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 ZNF99A8MXY4 864 aaPredicted RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 EGFRP00533 1210 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 UROSP10746 265 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 CHRM1P11229 460 aaPredicted RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 ATXN1P54253 815 aaKnown RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 EEFSECP57772 596 aaKnown RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 EIF3MQ7L2H7 374 aaKnown RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 CDH24Q86UP0 819 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 FAR1Q8WVX9 515 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 MTFMTQ96DP5 389 aaKnown RBP19.25■□□□□ 0.67
USP48-201ENST00000308271 EMILIN2Q9BXX0 1053 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 ABHD16BQ9H3Z7 469 aa19.25■□□□□ 0.67
USP48-201ENST00000308271 KAT6AQ92794 2004 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 SLC22A1O15245 554 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 MSCO60682 206 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 DHRS4L1P0CG22 281 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 PPP2R1BP30154 601 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 ELP6Q0PNE2 266 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 SH3D19Q5HYK7 790 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 ZFP28Q8NHY6 868 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 SPRTNQ9H040 489 aaPredicted RBP19.24■□□□□ 0.67
USP48-201ENST00000308271 CORO2BQ9UQ03 480 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 PIRTP0C851 137 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 LPOP22079 712 aaPredicted RBP19.24■□□□□ 0.67
USP48-201ENST00000308271 HTR7P34969 479 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 SLC16A1P53985 500 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 COX10Q12887 443 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 RFTN1Q14699 578 aaPredicted RBP19.24■□□□□ 0.67
USP48-201ENST00000308271 PABPC1LQ4VXU2 614 aaKnown RBP19.24■□□□□ 0.67
USP48-201ENST00000308271 NIPAL1Q6NVV3 410 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 XKR5Q6UX68 686 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 PLEKHH3Q7Z736 793 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 NDRG1Q92597 394 aaKnown RBP19.24■□□□□ 0.67
USP48-201ENST00000308271 VPS35Q96QK1 796 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 NUSAP1Q9BXS6 441 aaKnown RBP19.24■□□□□ 0.67
USP48-201ENST00000308271 TRPM5Q9NZQ8 1165 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 TELO2Q9Y4R8 837 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 NR2E3Q9Y5X4 410 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 A0A1W2PPW3 197 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 PRRG1O14668 218 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 NTRK1P04629 796 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 GM2AP17900 193 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 KLHL12Q53G59 568 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 TMEM110Q86TL2 294 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 FZD8Q9H461 694 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 CNTN3Q9P232 1028 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 DNAJB9Q9UBS3 223 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 STYXL1Q9Y6J8 313 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 NEMP2A6NFY4 417 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 H0YJX3 145 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 H7C4K7 107 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 PLK4O00444 970 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 PAGE1O75459 146 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 RPP40O75818 363 aaKnown RBP19.24■□□□□ 0.67
USP48-201ENST00000308271 OR56A5P0C7T3 313 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 MAGP20916 626 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 ATAD3BQ5T9A4 648 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 CCDC149Q6ZUS6 474 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 PANX1Q96RD7 426 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 GPR22Q99680 433 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 ACTR3BQ9P1U1 418 aa19.24■□□□□ 0.67
USP48-201ENST00000308271 NUP188Q5SRE5 1749 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 J3QRK9 145 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 CYP4F2P78329 520 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 CYP4F3Q08477 520 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 TYSND1Q2T9J0 566 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 TNFAIP8L3Q5GJ75 292 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms