RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 HACD3Q9P035 362 aa12.98□□□□□ -0.33
CLK3-224ENST00000568605 SPASTQ9UBP0 616 aa12.98□□□□□ -0.33
CLK3-224ENST00000568605 KLQ9UEF7 1012 aa12.98□□□□□ -0.33
CLK3-224ENST00000568605 APOBEC3BQ9UH17 382 aaKnown RBP12.98□□□□□ -0.33
CLK3-224ENST00000568605 ZNF711Q9Y462 761 aa12.98□□□□□ -0.33
CLK3-224ENST00000568605 JRKLQ9Y4A0 524 aa12.98□□□□□ -0.33
CLK3-224ENST00000568605 RGSL1A5PLK6 1076 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 SDC3O75056 442 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 CSF2P04141 144 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 HOXC4P09017 264 aaPredicted RBP12.97□□□□□ -0.33
CLK3-224ENST00000568605 C1SP09871 688 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 GM2AP17900 193 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 GPR1P46091 355 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 WNT3AP56704 352 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 SIM1P81133 766 aaPredicted RBP12.97□□□□□ -0.33
CLK3-224ENST00000568605 PPARDQ03181 441 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 IHHQ14623 411 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 SHBQ15464 509 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 TRIP6Q15654 476 aaKnown RBP12.97□□□□□ -0.33
CLK3-224ENST00000568605 PNCKQ6P2M8 343 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 KDELC1Q6UW63 502 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 ENPP7Q6UWV6 458 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 Q6ZVL8 140 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 KDELC2Q7Z4H8 507 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 GLRX5Q86SX6 157 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 HEATR4Q86WZ0 1026 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 PHACTR4Q8IZ21 702 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 ZNF548Q8NEK5 533 aaPredicted RBP12.97□□□□□ -0.33
CLK3-224ENST00000568605 BAHD1Q8TBE0 780 aaPredicted RBP12.97□□□□□ -0.33
CLK3-224ENST00000568605 DUSP23Q9BVJ7 150 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 GPR63Q9BZJ6 419 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 APOBEC2Q9Y235 224 aaKnown RBP12.97□□□□□ -0.33
CLK3-224ENST00000568605 OR1A2Q9Y585 309 aa12.97□□□□□ -0.33
CLK3-224ENST00000568605 C5orf60A6NFR6 353 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 GOLGA8CPA6NN73 597 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 F5H423 210 aaPredicted RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 AQP9O43315 295 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 LIASO43766 372 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 CBFA2T3O75081 653 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 TRIM16O95361 564 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 CLDN7O95471 211 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 SLC4A1P02730 911 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 CTSEP14091 401 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 DGKAP23743 735 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 PSMB4P28070 264 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 STIP1P31948 543 aaKnown RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 TRIM23P36406 574 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 CDK3Q00526 305 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 ELOCQ15369 112 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 FAXCQ5TGI0 409 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 ZDHHC20Q5W0Z9 365 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 LYSMD3Q7Z3D4 306 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 TECPR1Q7Z6L1 1165 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 NLRP8Q86W28 1048 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 FSTL5Q8N475 847 aaPredicted RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 EID2Q8N6I1 236 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 PLA2G15Q8NCC3 412 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 OR56A4Q8NGH8 313 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 CCDC110Q8TBZ0 833 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 FUBP1Q96AE4 644 aaKnown RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 OXNAD1Q96HP4 312 aaPredicted RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 MRGPRX2Q96LB1 330 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 CAMK1GQ96NX5 476 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 NAP1L3Q99457 506 aaPredicted RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 TLR10Q9BXR5 811 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 C10orf88Q9H8K7 445 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 HOMER3Q9NSC5 361 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 NLGN3Q9NZ94 848 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 NCKIPSDQ9NZQ3 722 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 NFKBIL1Q9UBC1 381 aaPredicted RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 FEZ2Q9UHY8 353 aaPredicted RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 CD84Q9UIB8 345 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 ZNF148Q9UQR1 794 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 BTBD3Q9Y2F9 522 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 R3HDM2Q9Y2K5 976 aaKnown RBP12.96□□□□□ -0.33
CLK3-224ENST00000568605 CSNK1G3Q9Y6M4 447 aa12.96□□□□□ -0.33
CLK3-224ENST00000568605 LOC285095A0A1B0GVY8 99 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 TCRBV7S2A1N4TA0A589 114 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 TNFRSF10CO14798 259 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 GIPC1O14908 333 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 FFAR2O15552 330 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 TNFSF14O43557 240 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 CEP104O60308 925 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 GCATO75600 419 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 LDOC1O95751 146 aaPredicted RBP12.95□□□□□ -0.34
CLK3-224ENST00000568605 FGGP02679 453 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 ADRB1P08588 477 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 SPINT3P49223 89 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 HK3P52790 923 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 DCDC1P59894 354 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 PTSQ03393 145 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 BNIP3Q12983 259 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 EIF2B5Q13144 721 aaKnown RBP12.95□□□□□ -0.34
CLK3-224ENST00000568605 SLC1A5Q15758 541 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 LONRF2Q1L5Z9 754 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 ZNF542PQ5EBM4 170 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 PRRT3Q5FWE3 981 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 SIRPB2Q5JXA9 342 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 ZNF569Q5MCW4 686 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 TPRG1LQ5T0D9 272 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 172.8 ms