RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ACAP2Q15057 778 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 ATXN7L2Q5T6C5 722 aaPredicted RBP16.83■□□□□ 0.28
LDLR-206ENST00000557958 TMEM184AQ6ZMB5 413 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 NPAS3Q8IXF0 933 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 NSMCE3Q96MG7 304 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 OLFM1Q99784 485 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 C19orf43Q9BQ61 176 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 TM6SF2Q9BZW4 377 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 SLC25A13Q9UJS0 675 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 MTCH2Q9Y6C9 303 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 WNT6Q9Y6F9 365 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 SLC9A3R1O14745 358 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 ITM2AO43736 263 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 NDUFS3O75489 264 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 LYPLA1O75608 230 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 RASSF9O75901 435 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 MT-CO1P00395 513 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 SLC4A1P02730 911 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 SERPINA4P29622 427 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 CD70P32970 193 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 ABL2P42684 1182 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 TTPAP49638 278 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 SNRPD1P62314 119 aaKnown RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 SULT2A1Q06520 285 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 ADGRE1Q14246 886 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 CSHL1Q14406 222 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 DMC1Q14565 340 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 TBCCQ15814 346 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 PITRM1Q5JRX3 1037 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 CFAP157Q5JU67 520 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 HEXDCQ8WVB3 486 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.82■□□□□ 0.282e-6■■■■□ 26.2
LDLR-206ENST00000557958 ISG20Q96AZ6 181 aaKnown RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 RILPQ96NA2 401 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 GPR78Q96P69 363 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 ZNF395Q9H8N7 513 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 CLEC1BQ9P126 229 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 CRYL1Q9Y2S2 319 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 NOTCH4Q99466 2003 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 HELZP42694 1942 aaKnown RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 H7C0S8 307 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 PENKP01210 267 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 CCDC166P0CW27 439 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 TCF3P15923 654 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 FDXRP22570 491 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 ATP5F1P24539 256 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 SERPINB5P36952 375 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 PTPRCAPQ14761 206 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 ZNF77Q15935 545 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 FAM78AQ5JUQ0 283 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 FAM91A1Q658Y4 838 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 LDB1Q86U70 411 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 TMEM25Q86YD3 366 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 TMEM151AQ8N4L1 468 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 CELF5Q8N6W0 485 aaKnown RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 OR2AP1Q8NGE2 309 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 INPP5DQ92835 1189 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 LRCH3Q96II8 777 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 UBXN10Q96LJ8 280 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 RAB3IPQ96QF0 476 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 SORT1Q99523 831 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 BBS2Q9BXC9 721 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 GPR63Q9BZJ6 419 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 ILKAPQ9H0C8 392 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 IGSF5Q9NSI5 407 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 POLR3BQ9NW08 1133 aaPredicted RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 DNAJC28Q9NX36 388 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 SORCS3Q9UPU3 1222 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 APOBEC2Q9Y235 224 aaKnown RBP16.82■□□□□ 0.28
LDLR-206ENST00000557958 HS3ST2Q9Y278 367 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 ZNF711Q9Y462 761 aa16.82■□□□□ 0.28
LDLR-206ENST00000557958 PDE4DIPQ5VU43 2346 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 TARM1B6A8C7 271 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 F8W8V4 182 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 K7ERQ8 282 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 SOX1O00570 391 aaPredicted RBP16.81■□□□□ 0.28
LDLR-206ENST00000557958 TRAFD1O14545 582 aaPredicted RBP16.81■□□□□ 0.28
LDLR-206ENST00000557958 TBX10O75333 385 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 SLC8A1P32418 973 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 PPARGP37231 505 aaPredicted RBP16.81■□□□□ 0.28
LDLR-206ENST00000557958 RCN2Q14257 317 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 KRT72Q14CN4 511 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 PIWIL4Q7Z3Z4 852 aaKnown RBP16.81■□□□□ 0.28
LDLR-206ENST00000557958 SLC22A9Q8IVM8 553 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 TUBGCP5Q96RT8 1024 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 GATA5Q9BWX5 397 aaPredicted RBP16.81■□□□□ 0.28
LDLR-206ENST00000557958 CEP44Q9C0F1 390 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 DRC3Q9H069 523 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 SLC40A1Q9NP59 571 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 SPHK2Q9NRA0 654 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 NCKIPSDQ9NZQ3 722 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 LMCD1Q9NZU5 365 aa16.81■□□□□ 0.28
LDLR-206ENST00000557958 UBA6A0AVT1 1052 aaPredicted RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 NEDD8-MDP1E9PL57 170 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 FCHO1O14526 889 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 HTRA2O43464 458 aaPredicted RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 ALOX15P16050 662 aaPredicted RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 SP100P23497 879 aaPredicted RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 TARSP26639 723 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms