RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 KCNK13Q9HB14 408 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 SAR1AQ9NR31 198 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 OXSMQ9NWU1 459 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 CLDND1Q9NY35 253 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 TBC1D14Q9P2M4 693 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 HEY2Q9UBP5 337 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 RPL26L1Q9UNX3 145 aaKnown RBP16.86■□□□□ 0.29
LDLR-206ENST00000557958 FCF1Q9Y324 198 aaKnown RBP16.86■□□□□ 0.29
LDLR-206ENST00000557958 VWA7Q9Y334 891 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 ATG2AQ2TAZ0 1938 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 DENND4CQ5VZ89 1909 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 CCDC162PA2VCL2 907 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 PSMA3P25788 255 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 GRIA4P48058 902 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 PLK1P53350 603 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 LMAN2Q12907 356 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 PLEKHG6Q3KR16 790 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 ARMC12Q5T9G4 340 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 HECTD2Q5U5R9 776 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 LIPMQ5VYY2 423 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 SYCE2Q6PIF2 218 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 MTDHQ86UE4 582 aaKnown RBP16.86■□□□□ 0.29
LDLR-206ENST00000557958 MFSD6LQ8IWD5 586 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 CENPLQ8N0S6 344 aaPredicted RBP16.86■□□□□ 0.29
LDLR-206ENST00000557958 CDKN2AIPNLQ96HQ2 116 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 GPAMQ9HCL2 828 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 ABCB8Q9NUT2 735 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 CCL22O00626 93 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 SNUPNO95149 360 aaKnown RBP16.85■□□□□ 0.29
LDLR-206ENST00000557958 HSPA4LO95757 839 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 IGSF6O95976 241 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 POU2F2P09086 479 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 LTA4HP09960 611 aaKnown RBP16.85■□□□□ 0.29
LDLR-206ENST00000557958 STC1P52823 247 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 TRAF2Q12933 501 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 LRIT3Q3SXY7 679 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 RBM20Q5T481 1227 aaKnown RBP16.85■□□□□ 0.29
LDLR-206ENST00000557958 CLNKQ7Z7G1 428 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 GPR149Q86SP6 731 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 APCDD1Q8J025 514 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 FSTL5Q8N475 847 aaPredicted RBP16.85■□□□□ 0.29
LDLR-206ENST00000557958 OR4K2Q8NGD2 314 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 RIN3Q8TB24 985 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 KLHL29Q96CT2 875 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 CCDC126Q96EE4 140 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 MYO19Q96H55 970 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 NDNQ99608 321 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 YY1AP1Q9H869 796 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 MARCH4Q9P2E8 410 aaPredicted RBP16.85■□□□□ 0.29
LDLR-206ENST00000557958 CPSF2Q9P2I0 782 aaKnown RBP16.85■□□□□ 0.29
LDLR-206ENST00000557958 DNAJC16Q9Y2G8 782 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 SPO11Q9Y5K1 396 aa16.85■□□□□ 0.29
LDLR-206ENST00000557958 OR51F1A6NGY5 319 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 AURKAO14965 403 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 STX7O15400 261 aaKnown RBP16.84■□□□□ 0.29
LDLR-206ENST00000557958 BUD23O43709 281 aaKnown RBP16.84■□□□□ 0.29
LDLR-206ENST00000557958 CCDC22O60826 627 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 PDHA1P08559 390 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 RBP1P09455 135 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 KITP10721 976 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 VIPR2P41587 438 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 AQP5P55064 265 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 NCALDP61601 193 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 DLX2Q07687 328 aaPredicted RBP16.84■□□□□ 0.29
LDLR-206ENST00000557958 BCL2L1Q07817 233 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 ADAM15Q13444 863 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 TYSND1Q2T9J0 566 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 AARS2Q5JTZ9 985 aaKnown RBP16.84■□□□□ 0.29
LDLR-206ENST00000557958 CES4AQ5XG92 561 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 PAF1Q8N7H5 531 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 OR6Y1Q8NGX8 325 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 SKA1Q96BD8 255 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 NXNL1Q96CM4 212 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 CCDC68Q9H2F9 335 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 LINC00597Q9H2U6 94 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 SUDS3Q9H7L9 328 aaPredicted RBP16.84■□□□□ 0.29
LDLR-206ENST00000557958 POPDC3Q9HBV1 291 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 XPR1Q9UBH6 696 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 MARCOQ9UEW3 520 aaPredicted RBP16.84■□□□□ 0.29
LDLR-206ENST00000557958 PKP3Q9Y446 797 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 TRANK1O15050 2925 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 TK2O00142 265 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 SOCS5O75159 536 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 SERPINB3P29508 390 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 GMPRP36959 345 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 GLRBP48167 497 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 HK2P52789 917 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 ZNF460Q14592 562 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 ZNF789Q5FWF6 425 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 ATAT1Q5SQI0 421 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 CES5AQ6NT32 575 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 MDGA1Q8NFP4 955 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 FGF13Q92913 245 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 OTUB2Q96DC9 234 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 C20orf27Q9GZN8 174 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 ATP13A3Q9H7F0 1226 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 MAGEE1Q9HCI5 957 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 PCDHB9Q9Y5E1 797 aa16.84■□□□□ 0.29
LDLR-206ENST00000557958 FZD6O60353 706 aa16.83■□□□□ 0.28
LDLR-206ENST00000557958 PGLSO95336 258 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 197.4 ms