RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NBASA2RRP1 2371 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 ARHGAP42A6NI28 874 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 EFCAB7A8K855 629 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 PALMO75781 387 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 PRKCGP05129 697 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 PRKAR1AP10644 381 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 HTR7P34969 479 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 GNPDA1P46926 289 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 NDST2P52849 883 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 CDC20Q12834 499 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 KLRB1Q12918 225 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 RAB6CQ53S08 254 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 KLHDC7AQ5VTJ3 777 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 AFMIDQ63HM1 303 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 SLC30A9Q6PML9 568 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 DPPA4Q7L190 304 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 KDELC2Q7Z4H8 507 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 EPS8L1Q8TE68 723 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 NUS1Q96E22 293 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 PSMG3-AS1Q96PY0 264 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 SELENOOQ9BVL4 669 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 LGR4Q9BXB1 951 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 RAB6CQ9H0N0 254 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 SCN8AQ9UQD0 1980 aa16.93■□□□□ 0.3
VPS29-204ENST00000548259 A0A1W2PQ67 120 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 F8VZ95 297 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 BUB1BO60566 1050 aaPredicted RBP16.92■□□□□ 0.3
VPS29-204ENST00000548259 PRAMEF11O60813 436 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 THRAP10827 490 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 UCHL3P15374 230 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 GPD1P21695 349 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 CDR2Q01850 454 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 RALGDSQ12967 914 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 TMEM71Q6P5X7 295 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 CEACAM20Q6UY09 585 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 PHLDB2Q86SQ0 1253 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 OR10G6Q8NH81 332 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 ABHD17AQ96GS6 310 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 C11orf70Q9BRQ4 267 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 TUBGCP2Q9BSJ2 902 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 CINPQ9BW66 212 aaPredicted RBP16.92■□□□□ 0.3
VPS29-204ENST00000548259 PILRAQ9UKJ1 303 aa16.92■□□□□ 0.3
VPS29-204ENST00000548259 MYO9AB2RTY4 2548 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 IGHV1OR21-1A0A087WYE8 117 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 BLACEA4D250 179 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 NKX2-8O15522 239 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 DUX1O43812 170 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 NSFP46459 744 aaKnown RBP16.91■□□□□ 0.3
VPS29-204ENST00000548259 ARSDP51689 593 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 TPI1P60174 286 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 AP1S1P61966 158 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 NSUN2Q08J23 767 aaKnown RBP eCLIP16.91■□□□□ 0.3
VPS29-204ENST00000548259 ABHD18Q0P651 414 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 RFTN1Q14699 578 aaPredicted RBP16.91■□□□□ 0.3
VPS29-204ENST00000548259 NKAIN2Q5VXU1 208 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 ANKS6Q68DC2 871 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 HEATR4Q86WZ0 1026 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 ZSWIM9Q86XI8 627 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 PYROXD2Q8N2H3 581 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 TEX19Q8NA77 164 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 MLKLQ8NB16 471 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 JOSD2Q8TAC2 188 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 ECHDC3Q96DC8 303 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 MAGEB5Q9BZ81 275 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 PDFQ9HBH1 243 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 KIAA1468Q9P260 1216 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 KCTD3Q9Y597 815 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 PCDHB3Q9Y5E6 796 aa16.91■□□□□ 0.3
VPS29-204ENST00000548259 CHD5Q8TDI0 1954 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.9■□□□□ 0.3
VPS29-204ENST00000548259 GOLGA6CA6NDK9 693 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 GOLGA6BA6NDN3 693 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 PRR19A6NJB7 356 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 MKRN2OSH3BPM6 223 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 CYP1A1P04798 512 aaPredicted RBP16.9■□□□□ 0.3
VPS29-204ENST00000548259 CALB1P05937 261 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 CEACAM5P06731 702 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 GOLGA6DP0CG33 693 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 TCN2P20062 427 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 RFC1P35251 1148 aaPredicted RBP16.9■□□□□ 0.3
VPS29-204ENST00000548259 RENBPP51606 427 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 DEFB109BQ30KR1 87 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 CRTC2Q53ET0 693 aaPredicted RBP16.9■□□□□ 0.3
VPS29-204ENST00000548259 NRROSQ86YC3 692 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 TSEN2Q8NCE0 465 aaKnown RBP16.9■□□□□ 0.3
VPS29-204ENST00000548259 SLC30A5Q8TAD4 765 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 PMEPA1Q969W9 287 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 SLC38A3Q99624 504 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 NAA15Q9BXJ9 866 aaKnown RBP16.9■□□□□ 0.3
VPS29-204ENST00000548259 TEX101Q9BY14 249 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 STN1Q9H668 368 aaKnown RBP16.9■□□□□ 0.3
VPS29-204ENST00000548259 SP110Q9HB58 689 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 OCIAD1Q9NX40 245 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 GOLGA6AQ9NYA3 693 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 ADAM22Q9P0K1 906 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 SUFUQ9UMX1 484 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 PLAAQ9Y263 795 aa16.9■□□□□ 0.3
VPS29-204ENST00000548259 A8MX80 341 aa16.89■□□□□ 0.29
VPS29-204ENST00000548259 J3KR12 359 aa16.89■□□□□ 0.29
VPS29-204ENST00000548259 DAPK3O43293 454 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 171.2 ms