RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CREMQ03060 361 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 SNAPC1Q16533 368 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PTF1AQ7RTS3 328 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 GHDCQ8N2G8 530 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PHC3Q8NDX5 983 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF398Q8TD17 642 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 HELQQ8TDG4 1101 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 GFM1Q96RP9 751 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 TUBGCP5Q96RT8 1024 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 ELOVL4Q9GZR5 314 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 FAM196BA6NMK8 535 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 FADS2P1A8MWK0 482 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 HGFP14210 728 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PLK1P53350 603 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 SP140Q13342 867 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 OR4C6Q8NH72 309 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 OR52E6Q96RD3 313 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 GPRIN3Q6ZVF9 776 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 BEND7Q8N7W2 519 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 AP2M1Q96CW1 435 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 GPSM3Q9Y4H4 160 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PNPLA7Q6ZV29 1317 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 TPP1O14773 563 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PROSCO94903 275 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 TXNL4AP83876 142 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 CDK10Q15131 360 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PEX16Q9Y5Y5 336 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PIGBOS1A0A0B4J2F0 54 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 CLDN25C9JDP6 229 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 HCN1O60741 890 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 AP2S1P53680 142 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ELP6Q0PNE2 266 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PAN2Q504Q3 1202 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 TFAP2DQ7Z6R9 452 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 GPR180Q86V85 440 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 MPP5Q8N3R9 675 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ZSCAN5BA6NJL1 495 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 FADS2O95864 444 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 GNAO1P09471 354 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PEPDP12955 493 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 RNASE12Q5GAN4 147 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 STOML3Q8TAV4 291 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 FUT8Q9BYC5 575 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 LRMDAQ9H2I8 198 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 MCCC2Q9HCC0 563 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ZFP14Q9HCL3 533 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ATF5Q9Y2D1 282 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 GSC2O15499 205 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 MSL3P1P0C860 447 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 MASP1P48740 699 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ALDH5A1P51649 535 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 HCAR2Q8TDS4 363 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PFDN5Q99471 154 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PALLDQ8WX93 1383 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 RPTORQ8N122 1335 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 SH3BGRLO75368 114 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PCSK2P16519 638 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ADIGQ0VDE8 80 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 FSCN1Q16658 493 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 TMEM44Q2T9K0 475 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 METTL21AQ8WXB1 218 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 NKD1Q969G9 470 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ZDHHC15Q96MV8 337 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 CCSER2Q9H7U1 834 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 FKBP7Q9Y680 259 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 KCNE2Q9Y6J6 123 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ABLIM1O14639 778 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PTDSS1P48651 473 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 FOLH1Q04609 750 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 MTMR4Q9NYA4 1195 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 CLIC5Q9NZA1 410 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 BMPR2Q13873 1038 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 FBXO47Q5MNV8 452 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 ZDHHC6Q9H6R6 413 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 MED31Q9Y3C7 131 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 PTPRTO14522 1441 aa13.94□□□□□ -0.18
CCDC88A-201ENST00000263630 LINGO3P0C6S8 592 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC5A9Q2M3M2 681 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 RAP1GAP2Q684P5 730 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 LHFPL3Q86UP9 236 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 PPCDCQ96CD2 204 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 HOPXQ9BPY8 73 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 WASF3Q9UPY6 502 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 MDFIC2A0A1B0GVS7 189 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 H3BQF6 201 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 PIGNO95427 931 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 SGPL1O95470 568 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TUFMP49411 452 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 FAM153CQ494X1 144 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 RAB26Q9ULW5 256 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 DNAJA2O60884 412 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 KLK7P49862 253 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 RNASEH2BQ5TBB1 312 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 DNAJB7Q7Z6W7 309 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TMEM161BQ8NDZ6 487 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 OR52K1Q8NGK4 314 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 THAP6Q8TBB0 222 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TBCCD1Q9NVR7 557 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 RGS6P49758 472 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 CLCN5P51795 746 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms