RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CLDN5O00501 218 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 ENPP3O14638 875 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 CYP2B6P20813 491 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 MSX2P35548 267 aaPredicted RBP10.47□□□□□ -0.73
LIG1-220ENST00000601091 KRT6CP48668 564 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 AKR1D1P51857 326 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 PEX6Q13608 980 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 FAM187BQ17R55 369 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 SLC9A4Q6AI14 798 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 FBXO27Q8NI29 283 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.47□□□□□ -0.735e-11■■■■■ 94.1
LIG1-220ENST00000601091 CDCA5Q96FF9 252 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 GCNAQ96QF7 691 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 GAL3ST1Q99999 423 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 EBF4Q9BQW3 602 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 HGH1Q9BTY7 390 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 SPON2Q9BUD6 331 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 SMIM28A0A1B0GU29 152 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 GRIA4P48058 902 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 GTF2A2P52657 109 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 INCA1Q0VD86 236 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 PPA1Q15181 289 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 AGKQ53H12 422 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 FAM209BQ5JX69 171 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 MOB2Q70IA6 237 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 UTS2BQ765I0 119 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 LZTR1Q8N653 840 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 PQLC3Q8N755 202 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 ZBED3Q96IU2 234 aaPredicted RBP10.47□□□□□ -0.73
LIG1-220ENST00000601091 SIGLEC10Q96LC7 697 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 CDH19Q9H159 772 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 S100A14Q9HCY8 104 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 TMEM216Q9P0N5 145 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 TMEM238LA0A1B0GVL6 79 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 GNGT2O14610 69 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 UBDO15205 165 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 CABYRO75952 493 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 OCM2P0CE71 109 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 OCMP0CE72 109 aaPredicted RBP10.46□□□□□ -0.73
LIG1-220ENST00000601091 CTRB1P17538 263 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 ACTR3P61158 418 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 ACY1Q03154 408 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 VAC14Q08AM6 782 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 PAN2Q504Q3 1202 aaKnown RBP10.46□□□□□ -0.73
LIG1-220ENST00000601091 PCID2Q5JVF3 399 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 GNASQ5JWF2 1037 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 ZNF470Q6ECI4 717 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 CTRB2Q6GPI1 263 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 TICAM1Q8IUC6 712 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 SLC35F5Q8WV83 523 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 NRG4Q8WWG1 115 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 ATL1Q8WXF7 558 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 SLC9A6Q92581 669 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 NDRG1Q92597 394 aaKnown RBP10.46□□□□□ -0.73
LIG1-220ENST00000601091 AKAP1Q92667 903 aaKnown RBP eCLIP10.46□□□□□ -0.73
LIG1-220ENST00000601091 TRIM43Q96BQ3 446 aaPredicted RBP10.46□□□□□ -0.73
LIG1-220ENST00000601091 SMARCD1Q96GM5 515 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 CAMKK2Q96RR4 588 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 BTBD2Q9BX70 525 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 NFKBIZQ9BYH8 718 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 PRKD2Q9BZL6 878 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 DPEP3Q9H4B8 488 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 TRIM45Q9H8W5 580 aaPredicted RBP10.46□□□□□ -0.73
LIG1-220ENST00000601091 SLC7A8Q9UHI5 535 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 BMP10O95393 424 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 ITGAXP20702 1163 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 GCAP28676 217 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 CCR1P32246 355 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 PKNOX1P55347 436 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 MRPS22P82650 360 aaKnown RBP10.46□□□□□ -0.73
LIG1-220ENST00000601091 KLF10Q13118 480 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 BCL2A1Q16548 175 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 LPCAT4Q643R3 524 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 SULT1C3Q6IMI6 304 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 MAMDC2Q7Z304 686 aaPredicted RBP10.46□□□□□ -0.73
LIG1-220ENST00000601091 SLC51BQ86UW2 128 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 ZNF567Q8N184 647 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 PHF21AQ96BD5 680 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 VRTNQ9H8Y1 702 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 CAB39LQ9H9S4 337 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 VPS45Q9NRW7 570 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 SNX13Q9Y5W8 968 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 NR2E3Q9Y5X4 410 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 RAD54BQ9Y620 910 aa10.46□□□□□ -0.73
LIG1-220ENST00000601091 C15orf38-AP3S2A0A0A6YYH1 394 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 ARHGAP33O14559 1287 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 TNPO2O14787 897 aaKnown RBP10.46□□□□□ -0.74
LIG1-220ENST00000601091 PSMC3P17980 439 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 CDH3P22223 829 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 JAK1P23458 1154 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 EPHA3P29320 983 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 BEX3Q00994 111 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 SCRN3Q0VDG4 424 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 TMEM63BQ5T3F8 832 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 CERCAMQ5T4B2 595 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 PXDC1Q5TGL8 231 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 LIPMQ5VYY2 423 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 IFNEQ86WN2 208 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 TMEM86AQ8N2M4 240 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 RP9Q8TA86 221 aaKnown RBP10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms