RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 DCDC2BA2VCK2 349 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 CAPN8A6NHC0 703 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 RAD51BO15315 384 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 FZD6O60353 706 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 HEXIM1O94992 359 aaKnown RBP13.03□□□□□ -0.32
CLK3-224ENST00000568605 TRBC1P01850 177 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 PRKCGP05129 697 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 RBP3P10745 1247 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 CEACAM1P13688 526 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 ITIH2P19823 946 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 EPHA8P29322 1005 aaPredicted RBP13.03□□□□□ -0.32
CLK3-224ENST00000568605 GRK6P43250 576 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 CLDN2P57739 230 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 MTM1Q13496 603 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 IRF4Q15306 451 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 CNGA3Q16281 694 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 HS1BP3Q53T59 392 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 PPM1JQ5JR12 505 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 Q6ZSR6 202 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 PARGQ86W56 976 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 CNTD1Q8N815 330 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 TP53I13Q8NBR0 393 aaPredicted RBP13.03□□□□□ -0.32
CLK3-224ENST00000568605 SETD7Q8WTS6 366 aaKnown RBP13.03□□□□□ -0.32
CLK3-224ENST00000568605 PIH1D2Q8WWB5 315 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 CENPTQ96BT3 561 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 NUS1Q96E22 293 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 NSMCE3Q96MG7 304 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 SRPK1Q96SB4 655 aaKnown RBP13.03□□□□□ -0.32
CLK3-224ENST00000568605 IL21RQ9HBE5 538 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 GLOD4Q9HC38 313 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 CHKBQ9Y259 395 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 PPIL1Q9Y3C6 166 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 PLXNB3Q9ULL4 1909 aa13.03□□□□□ -0.32
CLK3-224ENST00000568605 POM121BA6NF01 834 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 NPIPB15A6NHN6 443 aaPredicted RBP13.02□□□□□ -0.33
CLK3-224ENST00000568605 TM4SF5O14894 197 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 RECQL5O94762 991 aaPredicted RBP13.02□□□□□ -0.33
CLK3-224ENST00000568605 ITGAVP06756 1048 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 CTPS1P17812 591 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 NFKB1P19838 968 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 HTR1BP28222 390 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 RXRGP48443 463 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 SKOR1P84550 965 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 SEMG2Q02383 582 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 NIPAL4Q0D2K0 466 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 PDE1CQ14123 709 aaPredicted RBP13.02□□□□□ -0.33
CLK3-224ENST00000568605 GSE1Q14687 1217 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 PCSK7Q16549 785 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 MEI1Q5TIA1 1274 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 PSAPL1Q6NUJ1 521 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 DARS2Q6PI48 645 aaKnown RBP13.02□□□□□ -0.33
CLK3-224ENST00000568605 RAVER1Q8IY67 606 aaKnown RBP13.02□□□□□ -0.33
CLK3-224ENST00000568605 PDLIM2Q96JY6 352 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 BMFQ96LC9 184 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 RBM15Q96T37 977 aaKnown RBP eCLIP13.02□□□□□ -0.338e-7■■■□□ 18.1
CLK3-224ENST00000568605 FRMD8P1Q9BZ68 369 aaPredicted RBP13.02□□□□□ -0.33
CLK3-224ENST00000568605 GPR27Q9NS67 375 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 RSPH14Q9UHP6 348 aa13.02□□□□□ -0.33
CLK3-224ENST00000568605 ARHGEF17Q96PE2 2063 aaPredicted RBP13.01□□□□□ -0.33
CLK3-224ENST00000568605 DCHS1Q96JQ0 3298 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 SPTY2D1-AS1A0A0U1RR47 76 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 GOLGA6CA6NDK9 693 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 GOLGA6BA6NDN3 693 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 A8MX80 341 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 ANKRD66B4E2M5 251 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 CACNB4O00305 520 aaPredicted RBP13.01□□□□□ -0.33
CLK3-224ENST00000568605 KCNK3O14649 394 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 KCNN4O15554 427 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 ANXA9O76027 345 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 KCNK5O95279 499 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 PCCBP05166 539 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 PYGLP06737 847 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 MMP2P08253 660 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 PDHA1P08559 390 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 ALPIP09923 528 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 GOLGA6DP0CG33 693 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 CD59P13987 128 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 TSHRP16473 764 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 LHCGRP22888 699 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 KELP23276 732 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 RBL1P28749 1068 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 BLKP51451 505 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 PFN3P60673 137 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 HNRNPKP61978 463 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLK3-224ENST00000568605 IL9RQ01113 521 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 CDK18Q07002 472 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 WASHC5Q12768 1159 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 KLF1Q13351 362 aaPredicted RBP13.01□□□□□ -0.33
CLK3-224ENST00000568605 MPP3Q13368 585 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 GALNT3Q14435 633 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 PRPSAP1Q14558 356 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 LRRC66Q68CR7 880 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 DENND2CQ68D51 928 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 ESRP1Q6NXG1 681 aaKnown RBP13.01□□□□□ -0.33
CLK3-224ENST00000568605 AADACL2Q6P093 401 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 MACC1Q6ZN28 852 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 B4GALNT4Q76KP1 1039 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 PID1Q7Z2X4 250 aa13.01□□□□□ -0.33
CLK3-224ENST00000568605 SPATS2Q86XZ4 545 aaKnown RBP13.01□□□□□ -0.33
CLK3-224ENST00000568605 ZNF567Q8N184 647 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms