RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 RASA4O43374 803 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 FGF3P11487 239 aaPredicted RBP16.97■□□□□ 0.31
VPS29-204ENST00000548259 CCNB1P14635 433 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 DESP17661 470 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 TRIM23P36406 574 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 PPM1FP49593 454 aaPredicted RBP16.97■□□□□ 0.31
VPS29-204ENST00000548259 NOMO3P69849 1222 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 MC1RQ01726 317 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 NR1D2Q14995 579 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 IGFBP7Q16270 282 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 ZNF438Q7Z4V0 828 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 ZNF677Q86XU0 584 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 PLA2G15Q8NCC3 412 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 FAM172AQ8WUF8 416 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 APOBEC4Q8WW27 367 aaKnown RBP16.97■□□□□ 0.31
VPS29-204ENST00000548259 SLC45A3Q96JT2 553 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 GPN2Q9H9Y4 310 aaPredicted RBP16.97■□□□□ 0.31
VPS29-204ENST00000548259 CARS2Q9HA77 564 aaKnown RBP16.97■□□□□ 0.31
VPS29-204ENST00000548259 LRRC4CQ9HCJ2 640 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 PHPT1Q9NRX4 125 aaPredicted RBP16.97■□□□□ 0.31
VPS29-204ENST00000548259 LHX3Q9UBR4 397 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 UNC13CQ8NB66 2214 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 DOCK4Q8N1I0 1966 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 FAM170AA1A519 330 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 ANKRD62A6NC57 917 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 B4E171 279 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 TEX33O43247 280 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 RAD1O60671 282 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 NFKBIAP25963 317 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 MAP4P27816 1152 aaKnown RBP16.96■□□□□ 0.31
VPS29-204ENST00000548259 TSPAN7P41732 249 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 MAZP56270 477 aaKnown RBP16.96■□□□□ 0.31
VPS29-204ENST00000548259 CYTH1Q15438 398 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 PNCKQ6P2M8 343 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 FAM129CQ86XR2 697 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 CAMK1DQ8IU85 385 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 NRSN1Q8IZ57 195 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 NDST4Q9H3R1 872 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 ZNF71Q9NQZ8 489 aaPredicted RBP16.96■□□□□ 0.31
VPS29-204ENST00000548259 TRNAU1APQ9NX07 287 aaKnown RBP16.96■□□□□ 0.31
VPS29-204ENST00000548259 NEU3Q9UQ49 428 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 B3GALT1Q9Y5Z6 326 aa16.96■□□□□ 0.31
VPS29-204ENST00000548259 CLEC18AA5D8T8 446 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 C2CD4BA6NLJ0 364 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 PES1O00541 588 aaKnown RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 FGF10O15520 208 aaPredicted RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 FGF1P05230 155 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 MMEP08473 750 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 KRT3P12035 628 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 MYCLP1P12525 358 aaPredicted RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 MMP8P22894 467 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 ERCC5P28715 1186 aaPredicted RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 CD1CP29017 333 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 CSNK1DP48730 415 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 GPLD1P80108 840 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 BCL2L1Q07817 233 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 ACOX1Q15067 660 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 LACTB2Q53H82 288 aaPredicted RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 KCTD16Q68DU8 428 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 CLEC18BQ6UXF7 455 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 LIPIQ6XZB0 460 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 NYAP1Q6ZVC0 841 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 NOP9Q86U38 636 aaKnown RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 C17orf82Q86X59 251 aaPredicted RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 UMODL1-AS1Q8N2C9 162 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 CCDC185Q8N715 623 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 NETO2Q8NC67 525 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 CLEC18CQ8NCF0 446 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 CCL4L1Q8NHW4 92 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 GPT2Q8TD30 523 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 CENPIQ92674 756 aaPredicted RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 NOL6Q9H6R4 1146 aaKnown RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 SPATS2LQ9NUQ6 558 aaKnown RBP16.95■□□□□ 0.3
VPS29-204ENST00000548259 TAAR2Q9P1P5 351 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 NOTCH2Q04721 2471 aa16.95■□□□□ 0.3
VPS29-204ENST00000548259 WASH4PA8MWX3 477 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 CREB3O43889 395 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 ECEL1O95672 775 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 COPB1P53618 953 aaKnown RBP16.94■□□□□ 0.3
VPS29-204ENST00000548259 AIF1P55008 147 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 HDAC4P56524 1084 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 SQSTM1Q13501 440 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 VWA3BQ502W6 1294 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 SCYL2Q6P3W7 929 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 TRIM72Q6ZMU5 477 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 SRLQ86TD4 932 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 SFTPA2Q8IWL1 248 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 NLGN4XQ8N0W4 816 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 NLGN4YQ8NFZ3 816 aaPredicted RBP16.94■□□□□ 0.3
VPS29-204ENST00000548259 AHCYL2Q96HN2 611 aaKnown RBP16.94■□□□□ 0.3
VPS29-204ENST00000548259 ZPBPQ9BS86 351 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 STK33Q9BYT3 514 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 KLC2Q9H0B6 622 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 TRIT1Q9H3H1 467 aaKnown RBP16.94■□□□□ 0.3
VPS29-204ENST00000548259 SUDS3Q9H7L9 328 aaPredicted RBP16.94■□□□□ 0.3
VPS29-204ENST00000548259 KCNK4Q9NYG8 393 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 FHOD1Q9Y613 1164 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 SPTAN1Q13813 2472 aaKnown RBP16.94■□□□□ 0.3
VPS29-204ENST00000548259 BSNQ9UPA5 3926 aa16.94■□□□□ 0.3
VPS29-204ENST00000548259 USP9YO00507 2555 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 340.8 ms